Result of FASTA (ccds) for
pF1KB7742
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7742, 486 aa
1>>>pF1KB7742 486 - 486 aa - 486 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.9299+/-0.00103; mu= -5.3887+/- 0.062
mean_var=363.2057+/-73.563, 0's: 0 Z-trim(114.8): 39 B-trim: 3 in 1/53
Lambda= 0.067297
statistics sampled from 15296 (15327) to 15296 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.471), width: 16
Scan time: 3.910
The best scores are: opt bits E(32554)
CCDS3003.1 HCLS1 gene_id:3059|Hs108|chr3 ( 486) 3301 334.2 1.9e-91
CCDS77800.1 HCLS1 gene_id:3059|Hs108|chr3 ( 449) 2395 246.2 5.4e-65
CCDS8197.1 CTTN gene_id:2017|Hs108|chr11 ( 513) 1120 122.5 1.1e-27
CCDS53676.1 CTTN gene_id:2017|Hs108|chr11 ( 634) 1120 122.6 1.3e-27
CCDS41680.1 CTTN gene_id:2017|Hs108|chr11 ( 550) 1111 121.6 2.1e-27
>>CCDS3003.1 HCLS1 gene_id:3059|Hs108|chr3 (486 aa)
initn: 3301 init1: 3301 opt: 3301 Z-score: 1755.3 bits: 334.2 E(32554): 1.9e-91
Smith-Waterman score: 3301; 99.6% identity (100.0% similar) in 486 aa overlap (1-486:1-486)
10 20 30 40 50 60
pF1KB7 MWKSVVGHDVSVSVETQGDDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MWKSVVGHDVSVSVETQGDDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRNK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAKGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAKGF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GGKYGVERDRADKSAVGFDYKGEVEKHTSQKDYSRGFGGRYGVEKDKWDKAALGYDYKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GGKYGVERDRADKSAVGFDYKGEVEKHTSQKDYSRGFGGRYGVEKDKWDKAALGYDYKGE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 TEKHESQRDYAKGFGGQYGIQKDRVDKSAVGFNEMEAPTTAYKKTTPIEAASSGARGLKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS30 TEKHESQRDYAKGFGGQYGIQKDRVDKSAVGFNEMEAPTTAYKKTTPIEAASSGTRGLKA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 KFESMAEEKRKREEEEKAQQVARRQQERKAVTKRSPEAPQPVIAMEEPAVPAPLPKKISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KFESMAEEKRKREEEEKAQQVARRQQERKAVTKRSPEAPQPVIAMEEPAVPAPLPKKISS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 EAWPPVGTPPSSESEPVRTSREHPVPLLPIRQTLPEDNEEPPALPPRTLEGLQVEEEPVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EAWPPVGTPPSSESEPVRTSREHPVPLLPIRQTLPEDNEEPPALPPRTLEGLQVEEEPVY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 EAEPEPEPEPEPEPENDYEDVEEMDRHEQEDEPEGDYEEVLEPEDSSFSSALAGSSGCPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EAEPEPEPEPEPEPENDYEDVEEMDRHEQEDEPEGDYEEVLEPEDSSFSSALAGSSGCPA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 GAGAGAVALGISAVALYDYQGEGSDELSFDPDDVITDIEMVDEGWWRGRCHGHFGLFPAN
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GAGAGAVALGISAVAVYDYQGEGSDELSFDPDDVITDIEMVDEGWWRGRCHGHFGLFPAN
430 440 450 460 470 480
pF1KB7 YVKLLE
::::::
CCDS30 YVKLLE
>>CCDS77800.1 HCLS1 gene_id:3059|Hs108|chr3 (449 aa)
initn: 2375 init1: 2375 opt: 2395 Z-score: 1280.4 bits: 246.2 E(32554): 5.4e-65
Smith-Waterman score: 2955; 92.0% identity (92.4% similar) in 486 aa overlap (1-486:1-449)
10 20 30 40 50 60
pF1KB7 MWKSVVGHDVSVSVETQGDDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MWKSVVGHDVSVSVETQGDDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRNK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAKGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAKGF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GGKYGVERDRADKSAVGFDYKGEVEKHTSQKDYSRGFGGRYGVEKDKWDKAALGYDYKGE
:::::::::::::::::::::::::::::::::
CCDS77 GGKYGVERDRADKSAVGFDYKGEVEKHTSQKDY---------------------------
130 140 150
190 200 210 220 230 240
pF1KB7 TEKHESQRDYAKGFGGQYGIQKDRVDKSAVGFNEMEAPTTAYKKTTPIEAASSGARGLKA
::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS77 ----------AKGFGGQYGIQKDRVDKSAVGFNEMEAPTTAYKKTTPIEAASSGTRGLKA
160 170 180 190 200
250 260 270 280 290 300
pF1KB7 KFESMAEEKRKREEEEKAQQVARRQQERKAVTKRSPEAPQPVIAMEEPAVPAPLPKKISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KFESMAEEKRKREEEEKAQQVARRQQERKAVTKRSPEAPQPVIAMEEPAVPAPLPKKISS
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB7 EAWPPVGTPPSSESEPVRTSREHPVPLLPIRQTLPEDNEEPPALPPRTLEGLQVEEEPVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EAWPPVGTPPSSESEPVRTSREHPVPLLPIRQTLPEDNEEPPALPPRTLEGLQVEEEPVY
270 280 290 300 310 320
370 380 390 400 410 420
pF1KB7 EAEPEPEPEPEPEPENDYEDVEEMDRHEQEDEPEGDYEEVLEPEDSSFSSALAGSSGCPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EAEPEPEPEPEPEPENDYEDVEEMDRHEQEDEPEGDYEEVLEPEDSSFSSALAGSSGCPA
330 340 350 360 370 380
430 440 450 460 470 480
pF1KB7 GAGAGAVALGISAVALYDYQGEGSDELSFDPDDVITDIEMVDEGWWRGRCHGHFGLFPAN
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GAGAGAVALGISAVAVYDYQGEGSDELSFDPDDVITDIEMVDEGWWRGRCHGHFGLFPAN
390 400 410 420 430 440
pF1KB7 YVKLLE
::::::
CCDS77 YVKLLE
>>CCDS8197.1 CTTN gene_id:2017|Hs108|chr11 (513 aa)
initn: 1361 init1: 1049 opt: 1120 Z-score: 610.6 bits: 122.5 E(32554): 1.1e-27
Smith-Waterman score: 1392; 44.3% identity (69.6% similar) in 519 aa overlap (1-484:1-511)
10 20 30 40 50
pF1KB7 MWKSVVGHDVSVSVETQG-DDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRN
:::. .:: ::.. . : :::.::::::::.:::::::::::..:::. ::::::.::.
CCDS81 MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 KVSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAKG
.: .::..:..::.:.::::::::::.::::.:::::::::::: ... :: ::.:...:
CCDS81 NVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVRG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 FGGKYGVERDRADKSAVGFDYKGEVEKHTSQKDYSRGFGGRYGVEKDKWDKAALGYDYKG
::::.::. ::.:.:::::.:.:..:::.:::::: ::::.:::. :. ::.:.:.::.:
CCDS81 FGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 ETEKHESQRDYAKGFGGQYGIQKDRVDKSAVGFNEMEAPTTAYKKTTPIEAASSGARGLK
.::::::::::.:::::.:::.::.:::::::: :... : ... . .: :..
CCDS81 KTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGF-EYQGKTEKHESQKDYVKGFGGKFGVQ
190 200 210 220 230
240 250 260 270 280
pF1KB7 AKFE---SMAEEKRKREEEEKAQQVARR--------QQERKAVTKRSPEAPQPVIAMEEP
. . ... ..... . ...:. . :..: . . : : . .
CCDS81 TDRQDKCALGWDHQEKLQLHESQKDYSKGFGGKYGVQKDRMDKNASTFEDVTQVSSAYQK
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 AVPAP-LPKKISSEAWPPVGTPPSSESEPVRTSREHPVPLLPIRQTLPEDNEEPPALPPR
.::. . .: :. . .:.: : .. . . : . .. .: :
CCDS81 TVPVEAVTSKTSNIRANFENLAKEKEQEDRRKAEAERA------QRMAKERQEQEE-ARR
300 310 320 330 340 350
350 360 370 380 390
pF1KB7 TLEGLQVEEEPVYEAEPEPEPEPEPEPEND-YEDVE----EMDRHEQ----EDEP-----
:: . . . : :.: : : . :::. :.. . : ::
CCDS81 KLEEQARAKTQTPPVSPAPQPTEERLPSSPVYEDAASFKAELSYRGPVSGTEPEPVYSME
360 370 380 390 400 410
400 410 420 430 440
pF1KB7 EGDYEEVLEPEDSSFSS-ALAGSSGCPAGAGAGAVA-------LGISAVALYDYQGEGSD
.::.:. . .... :. :. :. : . :::.::::::::. :.:
CCDS81 AADYREASSQQGLAYATEAVYESAEAPGHYPAEDSTYDEYENDLGITAVALYDYQAAGDD
420 430 440 450 460 470
450 460 470 480
pF1KB7 ELSFDPDDVITDIEMVDEGWWRGRCHGHFGLFPANYVKLLE
:.::::::.::.:::.:.::::: :.:..::::::::.:
CCDS81 EISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ
480 490 500 510
>>CCDS53676.1 CTTN gene_id:2017|Hs108|chr11 (634 aa)
initn: 1303 init1: 1049 opt: 1120 Z-score: 609.4 bits: 122.6 E(32554): 1.3e-27
Smith-Waterman score: 1334; 43.6% identity (69.0% similar) in 509 aa overlap (1-474:1-501)
10 20 30 40 50
pF1KB7 MWKSVVGHDVSVSVETQG-DDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRN
:::. .:: ::.. . : :::.::::::::.:::::::::::..:::. ::::::.::.
CCDS53 MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 KVSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAKG
.: .::..:..::.:.::::::::::.::::.:::::::::::: ... :: ::.:...:
CCDS53 NVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVRG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 FGGKYGVERDRADKSAVGFDYKGEVEKHTSQKDYSRGFGGRYGVEKDKWDKAALGYDYKG
::::.::. ::.:.:::::.:.:..:::.:::::: ::::.:::. :. ::.:.:.::.:
CCDS53 FGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 ETEKHESQRDYAKGFGGQYGIQKDRVDKSAVGFNEMEAPTTAYKKTTPIEAASSGARGLK
.::::::::::.:::::.:::.::.:::::::: :... : ... . .: :..
CCDS53 KTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGF-EYQGKTEKHESQKDYVKGFGGKFGVQ
190 200 210 220 230
240 250 260 270 280
pF1KB7 AKFE---SMAEEKRKREEEEKAQQVARR--------QQERKAVTKRSPEAPQPVIAMEEP
. . ... ..... . ...:. . :..: . . : : . .
CCDS53 TDRQDKCALGWDHQEKLQLHESQKDYSKGFGGKYGVQKDRMDKNASTFEDVTQVSSAYQK
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 AVPAP-LPKKISSEAWPPVGTPPSSESEPVRTSREHPVPLLPIRQTLPEDNEEPPALPPR
.::. . .: :. . .:.: : .. . . : . .. .: :
CCDS53 TVPVEAVTSKTSNIRANFENLAKEKEQEDRRKAEAERA------QRMAKERQEQEE-ARR
300 310 320 330 340 350
350 360 370 380 390
pF1KB7 TLEGLQVEEEPVYEAEPEPEPEPEPEPEND-YEDVE----EMDRHEQ----EDEP-----
:: . . . : :.: : : . :::. :.. . : ::
CCDS53 KLEEQARAKTQTPPVSPAPQPTEERLPSSPVYEDAASFKAELSYRGPVSGTEPEPVYSME
360 370 380 390 400 410
400 410 420 430 440
pF1KB7 EGDYEEVLEPEDSSFSS-ALAGSSGCPAGAGAGAVA-------LGISAVALYDYQGEGSD
.::.:. . .... :. :. :. : . :::.::::::::. :.:
CCDS53 AADYREASSQQGLAYATEAVYESAEAPGHYPAEDSTYDEYENDLGITAVALYDYQAAGDD
420 430 440 450 460 470
450 460 470 480
pF1KB7 ELSFDPDDVITDIEMVDEGWWRGRCHGHFGLFPANYVKLLE
:.::::::.::.:::.:.::::: :.:.:
CCDS53 EISFDPDDIITNIEMIDDGWWRGVCKGRFRELAFSCVRVALVPIKCSRDLPGQARGLRSA
480 490 500 510 520 530
>>CCDS41680.1 CTTN gene_id:2017|Hs108|chr11 (550 aa)
initn: 1996 init1: 1049 opt: 1111 Z-score: 605.5 bits: 121.6 E(32554): 2.1e-27
Smith-Waterman score: 1177; 41.0% identity (64.2% similar) in 520 aa overlap (1-455:1-519)
10 20 30 40 50
pF1KB7 MWKSVVGHDVSVSVETQG-DDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRN
:::. .:: ::.. . : :::.::::::::.:::::::::::..:::. ::::::.::.
CCDS41 MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 KVSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAKG
.: .::..:..::.:.::::::::::.::::.:::::::::::: ... :: ::.:...:
CCDS41 NVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVRG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 FGGKYGVERDRADKSAVGFDYKGEVEKHTSQKDYSRGFGGRYGVEKDKWDKAALGYDYKG
::::.::. ::.:.:::::.:.:..:::.:::::: ::::.:::. :. ::.:.:.::.:
CCDS41 FGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 ETEKHESQRDYAKGFGGQYGIQKDRVDKSAVGFNEMEAPTTAYKKTTPIEAASSGARGLK
.::::::::::.:::::.:::.::.:::::::: :... : ... . .: :..
CCDS41 KTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGF-EYQGKTEKHESQKDYVKGFGGKFGVQ
190 200 210 220 230
240 250 260 270 280
pF1KB7 AKFESMA------EEKRKREEEEKAQQ--------VARRQQERKAV-----TKRSPEAPQ
. .. .:: . .: .: . : ..:. :: : . . :
CCDS41 TDRQDKCALGWDHQEKLQLHESQKDYKTGFGGKFGVQSERQDSAAVGFDYKEKLAKHESQ
240 250 260 270 280 290
290 300 310 320
pF1KB7 PVIA-------------MEEPAVPAPLPKKISSEAWPPVGTPP-SSESEPVRTSREHPVP
. :.. : ..:: : . .:.. .:.. :. .
CCDS41 QDYSKGFGGKYGVQKDRMDKNASTFEDVTQVSSAYQKTVPVEAVTSKTSNIRANFENLAK
300 310 320 330 340 350
330 340 350 360 370
pF1KB7 LLPIRQTLPEDNEEPPALPPRTLEGLQVE---EEPVYEAEPEPEPEPEPEPEND------
.. . :. . . : ... :: . : : :.: ..
CCDS41 EKEQEDRRKAEAERAQRMAKERQEQEEARRKLEEQARAKTQTPPVSPAPQPTEERLPSSP
360 370 380 390 400 410
380 390 400 410 420
pF1KB7 -YEDVE----EMDRHEQ----EDEP-----EGDYEEVLEPEDSSFSS-ALAGSSGCPAGA
:::. :.. . : :: .::.:. . .... :. :. :.
CCDS41 VYEDAASFKAELSYRGPVSGTEPEPVYSMEAADYREASSQQGLAYATEAVYESAEAPGHY
420 430 440 450 460 470
430 440 450 460 470
pF1KB7 GAGAVA-------LGISAVALYDYQGEGSDELSFDPDDVITDIEMVDEGWWRGRCHGHFG
: . :::.::::::::. :.::.::::::.:
CCDS41 PAEDSTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYG
480 490 500 510 520 530
480
pF1KB7 LFPANYVKLLE
CCDS41 LFPANYVELRQ
540 550
486 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:08:14 2016 done: Fri Nov 4 22:08:15 2016
Total Scan time: 3.910 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]