FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7701, 414 aa
  1>>>pF1KB7701 414 - 414 aa - 414 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3452+/-0.00103; mu= 4.9297+/- 0.061
 mean_var=289.8083+/-62.491, 0's: 0 Z-trim(113.7): 813  B-trim: 755 in 1/50
 Lambda= 0.075339
 statistics sampled from 13370 (14306) to 13370 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.439), width:  16
 Scan time:  3.050

The best scores are:                                      opt bits E(32554)
CCDS9957.1 YY1 gene_id:7528|Hs108|chr14            ( 414) 2882 326.7 2.6e-89
CCDS14202.1 YY2 gene_id:404281|Hs108|chrX          ( 372) 1195 143.2 3.8e-34
CCDS3849.1 ZFP42 gene_id:132625|Hs108|chr4         ( 310)  942 115.6 6.5e-26


>>CCDS9957.1 YY1 gene_id:7528|Hs108|chr14                 (414 aa)
 initn: 2882 init1: 2882 opt: 2882  Z-score: 1716.9  bits: 326.7 E(32554): 2.6e-89
Smith-Waterman score: 2882; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)

               10        20        30        40        50        60
pF1KB7 MASGDTLYIATDGSEMPAEIVELHEIEVETIPVETIETTVVGEEEEEDDDDEDGGGGDHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MASGDTLYIATDGSEMPAEIVELHEIEVETIPVETIETTVVGEEEEEDDDDEDGGGGDHG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GGGGHGHAGHHHHHHHHHHHPPMIALQPLVTDDPTQVHHHQEVILVQTREEVVGGDDSDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 GGGGHGHAGHHHHHHHHHHHPPMIALQPLVTDDPTQVHHHQEVILVQTREEVVGGDDSDG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LRAEDGFEDQILIPVPAPAGGDDDYIEQTLVTVAAAGKSGGGGSSSSGGGRVKKGGGKKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 LRAEDGFEDQILIPVPAPAGGDDDYIEQTLVTVAAAGKSGGGGSSSSGGGRVKKGGGKKS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 GKKSYLSGGAGAAGGGGADPGNKKWEQKQVQIKTLEGEFSVTMWSSDEKKDIDHETVVEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 GKKSYLSGGAGAAGGGGADPGNKKWEQKQVQIKTLEGEFSVTMWSSDEKKDIDHETVVEE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 QIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKEDDAPRTIACPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 QIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKEDDAPRTIACPH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 KGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 KGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC
              310       320       330       340       350       360

              370       380       390       400       410    
pF1KB7 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ
              370       380       390       400       410    

>>CCDS14202.1 YY2 gene_id:404281|Hs108|chrX               (372 aa)
 initn: 1137 init1: 769 opt: 1195  Z-score: 726.5  bits: 143.2 E(32554): 3.8e-34
Smith-Waterman score: 1432; 56.4% identity (76.5% similar) in 413 aa overlap (1-413:1-371)

               10        20        30        40        50        60
pF1KB7 MASGDTLYIATDGSEMPAEIVELHEIEVETIPVETIETTVVGEEEEEDDDDEDGGGGDHG
       :::.. . :. :  :.::.:::::.:.:: .:.: : :  :   . :: :    :.  .:
CCDS14 MASNEDFSITQD-LEIPADIVELHDINVEPLPMEDIPTESV---QYEDVD----GNWIYG
               10         20        30        40               50  

               70        80        90       100       110       120
pF1KB7 GGGGHGHAGHHHHHHHHHHHPPMIALQPLVTDDPTQVHHHQEVILVQTREEVVGGDDSDG
       :                :.:::...:::: :.      : ::....::.:::::  :::.
CCDS14 G----------------HNHPPLMVLQPLFTNTGYG-DHDQEMLMLQTQEEVVGYCDSDN
                             60        70         80        90     

              130       140       150       160       170       180
pF1KB7 LRAEDGFEDQILIPVPAPAGGDDDYIEQTLVTVAAAGKSGGGGSSSSGGGRVKKGGGKKS
         ..: .:::. .:       .:.....::....:.. :    .:.:  .: :: . : :
CCDS14 QLGND-LEDQLALPDSI----EDEHFQMTLASLSASAAS----TSTSTQSRSKKPSKKPS
         100        110           120           130       140      

              190       200       210       220       230       240
pF1KB7 GKKSYLSGGAGAAGGGGADPGNKKWEQKQVQIKTLEGEFSVTMWSSDEKKDIDHETVVEE
       :: :  :  :. ::....  :..::::::.:.::::::::::::: ....:  . .: : 
CCDS14 GK-SATSTEANPAGSSSSL-GTRKWEQKQMQVKTLEGEFSVTMWSPNDNND--QGAVGEG
         150       160        170       180       190         200  

              250       260       270       280       290       300
pF1KB7 QIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKEDDAPRTIACPH
       :  .:: :::::::. ::::::::.::::::::::::::...::.. :  . :.:. : .
CCDS14 Q--AEN-PPDYSEYLKGKKLPPGGLPGIDLSDPKQLAEFTKVKPKRSK-GEPPKTVPCSY
               210       220       230       240        250        

              310       320       330       340       350       360
pF1KB7 KGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC
       .:: ::::: .::::::: :::::::::::::::.:::::.:::::::::::::::::::
CCDS14 SGCEKMFRDYAAMRKHLHIHGPRVHVCAECGKAFLESSKLRRHQLVHTGEKPFQCTFEGC
      260       270       280       290       300       310        

              370       380       390       400       410    
pF1KB7 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ
       :::::::::::::.::::::.:.::::: ::.:::::::::.:::::.:.::: 
CCDS14 GKRFSLDFNLRTHLRIHTGDKPFVCPFDVCNRKFAQSTNLKTHILTHVKTKNNP
      320       330       340       350       360       370  

>>CCDS3849.1 ZFP42 gene_id:132625|Hs108|chr4              (310 aa)
 initn: 1169 init1: 904 opt: 942  Z-score: 578.7  bits: 115.6 E(32554): 6.5e-26
Smith-Waterman score: 942; 65.9% identity (84.1% similar) in 214 aa overlap (203-414:99-306)

            180       190       200       210       220         230
pF1KB7 KKGGGKKSGKKSYLSGGAGAAGGGGADPGNKKWEQKQVQIKTLEGEFSVTMWSSDE--KK
                                     ::  ..:.. :..:.    ..  : :  ::
CCDS38 SDCYIECVIRGEFSQPILEEDSLFESLEYLKKGSEQQLSQKVFEAS---SLECSLEYMKK
       70        80        90       100       110          120     

              240       250       260       270       280       290
pF1KB7 DIDHETVVEEQIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKED
        . .:  . ..:.::::  .::::::::::::::::::::::::::::::: ::   :: 
CCDS38 GVKKE--LPQKIVGENSL-EYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARKKPPINKEY
         130         140        150       160       170       180  

              300       310       320       330       340       350
pF1KB7 DAPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGE
       :.  .::::..:::. .:. .:.::::  :::: ::::::::::::::::::: ::::::
CCDS38 DSLSAIACPQSGCTRKLRNRAALRKHLLIHGPRDHVCAECGKAFVESSKLKRHFLVHTGE
            190       200       210       220       230       240  

              360       370       380       390       400       410
pF1KB7 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA
       :::.:::::::::::::::::::::::::.. .::::.:::..: ::.:::.::::::..
CCDS38 KPFRCTFEGCGKRFSLDFNLRTHVRIHTGEKRFVCPFQGCNRRFIQSNNLKAHILTHANT
            250       260       270       280       290       300  

               
pF1KB7 KNNQ    
       ..:.    
CCDS38 NKNEQEGK
            310




414 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:04:09 2016 done: Fri Nov  4 22:04:10 2016
 Total Scan time:  3.050 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]