FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7690, 411 aa
  1>>>pF1KB7690 411 - 411 aa - 411 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9504+/-0.00036; mu= -2.0975+/- 0.023
 mean_var=271.0760+/-55.314, 0's: 0 Z-trim(123.2): 33  B-trim: 2509 in 2/59
 Lambda= 0.077898
 statistics sampled from 42673 (42712) to 42673 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.501), width:  16
 Scan time: 10.810

The best scores are:                                      opt bits E(85289)
NP_003070 (OMIM: 603111,607174,616938) SWI/SNF-rel ( 411) 2694 315.5 1.6e-85


>>NP_003070 (OMIM: 603111,607174,616938) SWI/SNF-related  (411 aa)
 initn: 2694 init1: 2694 opt: 2694  Z-score: 1656.6  bits: 315.5 E(85289): 1.6e-85
Smith-Waterman score: 2694; 99.8% identity (100.0% similar) in 411 aa overlap (1-411:1-411)

               10        20        30        40        50        60
pF1KB7 MSKRPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYRLGGNPSTNSRVTASSGITIP
       :::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
NP_003 MSKRPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYRLGGNPGTNSRVTASSGITIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAEDPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAEDPD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 DYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAAEIAQAEEQARKRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAAEIAQAEEQARKRQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 EEREKEAAEQAERSQSSIVPEEEQAANKGEEKKDDENIPMETEETHLEETTESQQNGEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EEREKEAAEQAERSQSSIVPEEEQAANKGEEKKDDENIPMETEETHLEETTESQQNGEEG
              310       320       330       340       350       360

              370       380       390       400       410 
pF1KB7 TSTPEDKESGQEGVDSMAEEGTSDSNTGSESNSATVEEPPTDPIPEDEKKE
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TSTPEDKESGQEGVDSMAEEGTSDSNTGSESNSATVEEPPTDPIPEDEKKE
              370       380       390       400       410 




411 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:01:32 2016 done: Sat Nov  5 08:01:34 2016
 Total Scan time: 10.810 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]