Result of FASTA (omim) for
pF1KB7687
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7687, 348 aa
1>>>pF1KB7687 348 - 348 aa - 348 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1272+/-0.00032; mu= 5.8726+/- 0.020
mean_var=181.0263+/-37.164, 0's: 0 Z-trim(121.5): 41 B-trim: 742 in 1/59
Lambda= 0.095324
statistics sampled from 38128 (38169) to 38128 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.448), width: 16
Scan time: 8.960
The best scores are: opt bits E(85289)
NP_003187 (OMIM: 604128) transcription elongation ( 348) 2311 329.3 7.4e-90
XP_006710927 (OMIM: 604128) PREDICTED: transcripti ( 351) 2290 326.5 5.5e-89
XP_011540355 (OMIM: 604128) PREDICTED: transcripti ( 364) 2290 326.5 5.7e-89
XP_016857689 (OMIM: 604128) PREDICTED: transcripti ( 487) 2290 326.6 7.1e-89
XP_016857692 (OMIM: 604128) PREDICTED: transcripti ( 450) 2058 294.6 2.7e-79
XP_016857690 (OMIM: 604128) PREDICTED: transcripti ( 466) 2023 289.8 7.8e-78
XP_016857693 (OMIM: 604128) PREDICTED: transcripti ( 327) 1374 200.5 4.4e-51
XP_016857691 (OMIM: 604128) PREDICTED: transcripti ( 466) 1353 197.7 4.3e-50
XP_016883526 (OMIM: 604784) PREDICTED: transcripti ( 272) 870 131.1 2.8e-30
XP_016883525 (OMIM: 604784) PREDICTED: transcripti ( 272) 870 131.1 2.8e-30
NP_942016 (OMIM: 604784) transcription elongation ( 272) 870 131.1 2.8e-30
NP_003186 (OMIM: 604784) transcription elongation ( 299) 870 131.1 3e-30
XP_006716530 (OMIM: 601425) PREDICTED: transcripti ( 254) 865 130.4 4.2e-30
XP_011515880 (OMIM: 601425) PREDICTED: transcripti ( 266) 865 130.4 4.4e-30
NP_958845 (OMIM: 601425) transcription elongation ( 280) 865 130.4 4.6e-30
NP_006747 (OMIM: 601425) transcription elongation ( 301) 865 130.4 4.8e-30
XP_011527324 (OMIM: 604784) PREDICTED: transcripti ( 297) 849 128.2 2.2e-29
XP_011527329 (OMIM: 604784) PREDICTED: transcripti ( 297) 849 128.2 2.2e-29
XP_011527325 (OMIM: 604784) PREDICTED: transcripti ( 297) 849 128.2 2.2e-29
XP_005260286 (OMIM: 604784) PREDICTED: transcripti ( 324) 849 128.3 2.4e-29
XP_016866115 (OMIM: 607789) PREDICTED: PHD finger (1308) 237 44.6 0.0015
XP_005248760 (OMIM: 607789) PREDICTED: PHD finger (1308) 237 44.6 0.0015
NP_001277188 (OMIM: 607789) PHD finger protein 3 i (1951) 237 44.7 0.002
XP_005248759 (OMIM: 607789) PREDICTED: PHD finger (1951) 237 44.7 0.002
XP_006715489 (OMIM: 607789) PREDICTED: PHD finger (2039) 237 44.7 0.0021
NP_055968 (OMIM: 607789) PHD finger protein 3 isof (2039) 237 44.7 0.0021
XP_005248758 (OMIM: 607789) PREDICTED: PHD finger (2039) 237 44.7 0.0021
XP_011533950 (OMIM: 607789) PREDICTED: PHD finger (2048) 237 44.7 0.0021
>>NP_003187 (OMIM: 604128) transcription elongation fact (348 aa)
initn: 2311 init1: 2311 opt: 2311 Z-score: 1734.2 bits: 329.3 E(85289): 7.4e-90
Smith-Waterman score: 2311; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)
10 20 30 40 50 60
pF1KB7 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
250 260 270 280 290 300
310 320 330 340
pF1KB7 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
310 320 330 340
>>XP_006710927 (OMIM: 604128) PREDICTED: transcription e (351 aa)
initn: 2290 init1: 2290 opt: 2290 Z-score: 1718.5 bits: 326.5 E(85289): 5.5e-89
Smith-Waterman score: 2290; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KB7 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
250 260 270 280 290 300
310 320 330 340
pF1KB7 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKMESAS
310 320 330 340 350
>>XP_011540355 (OMIM: 604128) PREDICTED: transcription e (364 aa)
initn: 2290 init1: 2290 opt: 2290 Z-score: 1718.3 bits: 326.5 E(85289): 5.7e-89
Smith-Waterman score: 2290; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KB7 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
250 260 270 280 290 300
310 320 330 340
pF1KB7 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKPPWRMPRNLSNFVA
310 320 330 340 350 360
XP_011 FLVL
>>XP_016857689 (OMIM: 604128) PREDICTED: transcription e (487 aa)
initn: 2290 init1: 2290 opt: 2290 Z-score: 1716.5 bits: 326.6 E(85289): 7.1e-89
Smith-Waterman score: 2290; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KB7 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
250 260 270 280 290 300
310 320 330 340
pF1KB7 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKDEQVCHLSTDGIGF
310 320 330 340 350 360
XP_016 LRSTEERKNILHLDHASLESASTDGISFEPGHSQGWETGRLSPVRKELNLNATRPSFPPK
370 380 390 400 410 420
>>XP_016857692 (OMIM: 604128) PREDICTED: transcription e (450 aa)
initn: 2058 init1: 2058 opt: 2058 Z-score: 1544.6 bits: 294.6 E(85289): 2.7e-79
Smith-Waterman score: 2058; 100.0% identity (100.0% similar) in 309 aa overlap (38-346:1-309)
10 20 30 40 50 60
pF1KB7 LRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSL
::::::::::::::::::::::::::::::
XP_016 MSIQLLQTTRIGVAVNGVRKHCSDKEVVSL
10 20 30
70 80 90 100 110 120
pF1KB7 AKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDPKTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDPKTR
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 RDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 RDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLKD
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 PRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDL
220 230 240 250 260 270
310 320 330 340
pF1KB7 FQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
:::::::::::::::::::::::::::::::::::::::
XP_016 FQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKDEQVCHLSTDGIGFLRSTEER
280 290 300 310 320 330
XP_016 KNILHLDHASLESASTDGISFEPGHSQGWETGRLSPVRKELNLNATRPSFPPKEALKVLP
340 350 360 370 380 390
>>XP_016857690 (OMIM: 604128) PREDICTED: transcription e (466 aa)
initn: 2141 init1: 2017 opt: 2023 Z-score: 1518.4 bits: 289.8 E(85289): 7.8e-78
Smith-Waterman score: 2103; 93.9% identity (93.9% similar) in 346 aa overlap (1-346:1-325)
10 20 30 40 50 60
pF1KB7 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
::::::::::::::::::::::: ::::::::::::::::
XP_016 MGQEEELLRIAKKLEKMVARKNT---------------------TTRIGVAVNGVRKHCS
10 20 30
70 80 90 100 110 120
pF1KB7 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
220 230 240 250 260 270
310 320 330 340
pF1KB7 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKDEQVCHLSTDGIGF
280 290 300 310 320 330
XP_016 LRSTEERKNILHLDHASLESASTDGISFEPGHSQGWETGRLSPVRKELNLNATRPSFPPK
340 350 360 370 380 390
>>XP_016857693 (OMIM: 604128) PREDICTED: transcription e (327 aa)
initn: 1348 init1: 1348 opt: 1374 Z-score: 1038.1 bits: 200.5 E(85289): 4.4e-51
Smith-Waterman score: 2129; 94.0% identity (94.0% similar) in 348 aa overlap (1-348:1-327)
10 20 30 40 50 60
pF1KB7 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
::::::: ::::::::::::::::::::::::::::::::
XP_016 REDPKTR---------------------SNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
130 140 150
190 200 210 220 230 240
pF1KB7 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
220 230 240 250 260 270
310 320 330 340
pF1KB7 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
280 290 300 310 320
>>XP_016857691 (OMIM: 604128) PREDICTED: transcription e (466 aa)
initn: 1327 init1: 1327 opt: 1353 Z-score: 1020.4 bits: 197.7 E(85289): 4.3e-50
Smith-Waterman score: 2108; 93.9% identity (93.9% similar) in 346 aa overlap (1-346:1-325)
10 20 30 40 50 60
pF1KB7 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
::::::: ::::::::::::::::::::::::::::::::
XP_016 REDPKTR---------------------SNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
130 140 150
190 200 210 220 230 240
pF1KB7 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
220 230 240 250 260 270
310 320 330 340
pF1KB7 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKDEQVCHLSTDGIGF
280 290 300 310 320 330
XP_016 LRSTEERKNILHLDHASLESASTDGISFEPGHSQGWETGRLSPVRKELNLNATRPSFPPK
340 350 360 370 380 390
>>XP_016883526 (OMIM: 604784) PREDICTED: transcription e (272 aa)
initn: 1073 init1: 823 opt: 870 Z-score: 664.7 bits: 131.1 E(85289): 2.8e-30
Smith-Waterman score: 1014; 50.6% identity (72.7% similar) in 322 aa overlap (27-348:1-272)
10 20 30 40 50 60
pF1KB7 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
.:::..:.. ....:::.::.:..::..::. :
XP_016 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSS
10 20 30
70 80 90 100 110 120
pF1KB7 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
:.::..::: :::.::.:::. :: .:.: :. : ..
XP_016 DEEVIALAKSLIKSWKKLLDASD------------AKARERG---------RGMPLPTSS
40 50 60 70
130 140 150 160 170 180
pF1KB7 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
:. :: .: . :... : :..::.: :: :
XP_016 RD--------------ASEAP--------DPSRKRPELPRAPSTPRITTF-------PPV
80 90 100
190 200 210 220 230 240
pF1KB7 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
.: :.::.:: :::.:::..: :. :..:......::. :.... .:::::.:::::
XP_016 PVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRS
110 120 130 140 150 160
250 260 270 280 290 300
pF1KB7 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
::::::: .:: :::::: :::. :: ::.::::::::.:.:.:::.:::::::::.:
XP_016 RISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMART
170 180 190 200 210 220
310 320 330 340
pF1KB7 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
::: :::: :.::.::::::.::::::.::::::::.:::::::::::
XP_016 GGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
230 240 250 260 270
>>XP_016883525 (OMIM: 604784) PREDICTED: transcription e (272 aa)
initn: 1073 init1: 823 opt: 870 Z-score: 664.7 bits: 131.1 E(85289): 2.8e-30
Smith-Waterman score: 1014; 50.6% identity (72.7% similar) in 322 aa overlap (27-348:1-272)
10 20 30 40 50 60
pF1KB7 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
.:::..:.. ....:::.::.:..::..::. :
XP_016 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSS
10 20 30
70 80 90 100 110 120
pF1KB7 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
:.::..::: :::.::.:::. :: .:.: :. : ..
XP_016 DEEVIALAKSLIKSWKKLLDASD------------AKARERG---------RGMPLPTSS
40 50 60 70
130 140 150 160 170 180
pF1KB7 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
:. :: .: . :... : :..::.: :: :
XP_016 RD--------------ASEAP--------DPSRKRPELPRAPSTPRITTF-------PPV
80 90 100
190 200 210 220 230 240
pF1KB7 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
.: :.::.:: :::.:::..: :. :..:......::. :.... .:::::.:::::
XP_016 PVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRS
110 120 130 140 150 160
250 260 270 280 290 300
pF1KB7 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
::::::: .:: :::::: :::. :: ::.::::::::.:.:.:::.:::::::::.:
XP_016 RISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMART
170 180 190 200 210 220
310 320 330 340
pF1KB7 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
::: :::: :.::.::::::.::::::.::::::::.:::::::::::
XP_016 GGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
230 240 250 260 270
348 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 09:08:38 2016 done: Sat Nov 5 09:08:39 2016
Total Scan time: 8.960 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]