Result of FASTA (ccds) for
pF1KB7687
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7687, 348 aa
1>>>pF1KB7687 348 - 348 aa - 348 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.9255+/-0.000823; mu= 0.9494+/- 0.050
mean_var=172.6068+/-34.744, 0's: 0 Z-trim(113.7): 26 B-trim: 0 in 0/55
Lambda= 0.097621
statistics sampled from 14265 (14282) to 14265 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.439), width: 16
Scan time: 3.010
The best scores are: opt bits E(32554)
CCDS44086.1 TCEA3 gene_id:6920|Hs108|chr1 ( 348) 2311 336.9 1.5e-92
CCDS13554.1 TCEA2 gene_id:6919|Hs108|chr20 ( 272) 870 133.9 1.5e-31
CCDS13553.1 TCEA2 gene_id:6919|Hs108|chr20 ( 299) 870 133.9 1.6e-31
CCDS47857.1 TCEA1 gene_id:6917|Hs108|chr8 ( 280) 865 133.2 2.5e-31
CCDS47858.1 TCEA1 gene_id:6917|Hs108|chr8 ( 301) 865 133.2 2.7e-31
>>CCDS44086.1 TCEA3 gene_id:6920|Hs108|chr1 (348 aa)
initn: 2311 init1: 2311 opt: 2311 Z-score: 1775.0 bits: 336.9 E(32554): 1.5e-92
Smith-Waterman score: 2311; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)
10 20 30 40 50 60
pF1KB7 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
250 260 270 280 290 300
310 320 330 340
pF1KB7 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
310 320 330 340
>>CCDS13554.1 TCEA2 gene_id:6919|Hs108|chr20 (272 aa)
initn: 1073 init1: 823 opt: 870 Z-score: 679.8 bits: 133.9 E(32554): 1.5e-31
Smith-Waterman score: 1014; 50.6% identity (72.7% similar) in 322 aa overlap (27-348:1-272)
10 20 30 40 50 60
pF1KB7 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
.:::..:.. ....:::.::.:..::..::. :
CCDS13 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSS
10 20 30
70 80 90 100 110 120
pF1KB7 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
:.::..::: :::.::.:::. :: .:.: :. : ..
CCDS13 DEEVIALAKSLIKSWKKLLDASD------------AKARERG---------RGMPLPTSS
40 50 60 70
130 140 150 160 170 180
pF1KB7 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
:. :: .: . :... : :..::.: :: :
CCDS13 RD--------------ASEAP--------DPSRKRPELPRAPSTPRITTF-------PPV
80 90 100
190 200 210 220 230 240
pF1KB7 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
.: :.::.:: :::.:::..: :. :..:......::. :.... .:::::.:::::
CCDS13 PVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRS
110 120 130 140 150 160
250 260 270 280 290 300
pF1KB7 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
::::::: .:: :::::: :::. :: ::.::::::::.:.:.:::.:::::::::.:
CCDS13 RISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMART
170 180 190 200 210 220
310 320 330 340
pF1KB7 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
::: :::: :.::.::::::.::::::.::::::::.:::::::::::
CCDS13 GGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
230 240 250 260 270
>>CCDS13553.1 TCEA2 gene_id:6919|Hs108|chr20 (299 aa)
initn: 1188 init1: 823 opt: 870 Z-score: 679.2 bits: 133.9 E(32554): 1.6e-31
Smith-Waterman score: 1126; 51.4% identity (74.4% similar) in 348 aa overlap (1-348:2-299)
10 20 30 40 50
pF1KB7 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHC
::.:::. :::..:.:::..:..:::.:::..:.. ....:::.::.:..::..::.
CCDS13 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 SDKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRK
::.::..::: :::.::.:::. :: .:.: :. : .
CCDS13 SDEEVIALAKSLIKSWKKLLDASD------------AKARERG---------RGMPLPTS
70 80 90
120 130 140 150 160 170
pF1KB7 KREDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAP
.:. :: .: . :... : :..::.: :: :
CCDS13 SRD--------------ASEAP--------DPSRKRPELPRAPSTPRITTFP-------P
100 110 120 130
180 190 200 210 220 230
pF1KB7 CYLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVR
.: :.::.:: :::.:::..: :. :..:......::. :.... .:::::.::::
CCDS13 VPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVR
140 150 160 170 180 190
240 250 260 270 280 290
pF1KB7 SRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK
:::::::: .:: :::::: :::. :: ::.::::::::.:.:.:::.:::::::::.
CCDS13 SRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMAR
200 210 220 230 240 250
300 310 320 330 340
pF1KB7 TGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
:::: :::: :.::.::::::.::::::.::::::::.:::::::::::
CCDS13 TGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
260 270 280 290
>>CCDS47857.1 TCEA1 gene_id:6917|Hs108|chr8 (280 aa)
initn: 895 init1: 831 opt: 865 Z-score: 675.8 bits: 133.2 E(32554): 2.5e-31
Smith-Waterman score: 985; 50.9% identity (70.8% similar) in 346 aa overlap (4-348:2-280)
10 20 30 40 50 60
pF1KB7 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
:.:..:.:::..::: .::. .::::..::..::. .
CCDS47 MEDEVVRFAKKMDKMVQKKNA---------------------STRIGMSVNAIRKQST
10 20 30
70 80 90 100 110 120
pF1KB7 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
:.::.:::: :::.::.:::.:. :: .. :::: .. :. .:::
CCDS47 DEEVTSLAKSLIKSWKKLLDGPST---EKDLDE---KKKEPAIT-SQNSPEA--------
40 50 60 70 80
130 140 150 160 170
pF1KB7 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAES-PKTPSSPLTPTFASSMCLLAP
:: .: ::.. : .. ...:. . . : :..::
CCDS47 RE---------ESTSSGNVSNRK---DETNARDTYVSSFPRAPS----------------
90 100 110
180 190 200 210 220 230
pF1KB7 CYLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVR
:.:::: :: :::.:::.. ::: :.. ....:.::. ::::...:::::.::::
CCDS47 ---TSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVR
120 130 140 150 160 170
240 250 260 270 280 290
pF1KB7 SRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK
:::::::: .::.::.::: : : :.:.:::::::::::.:.:. .:.::::::::::
CCDS47 SRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAK
180 190 200 210 220 230
300 310 320 330 340
pF1KB7 TGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
:::: :::: :.:::::::::.:::::::::::::::.:::::::::::
CCDS47 TGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC
240 250 260 270 280
>>CCDS47858.1 TCEA1 gene_id:6917|Hs108|chr8 (301 aa)
initn: 831 init1: 831 opt: 865 Z-score: 675.3 bits: 133.2 E(32554): 2.7e-31
Smith-Waterman score: 1112; 54.3% identity (76.0% similar) in 346 aa overlap (4-348:2-301)
10 20 30 40 50 60
pF1KB7 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
:.:..:.:::..::: .::. :::::::.:.. :...:::.::::..::..::. .
CCDS47 MEDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQST
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
:.::.:::: :::.::.:::.:. :: .. :::: .. :. .:::
CCDS47 DEEVTSLAKSLIKSWKKLLDGPST---EKDLDE---KKKEPAIT-SQNSPEA--------
60 70 80 90 100
130 140 150 160 170
pF1KB7 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAES-PKTPSSPLTPTFASSMCLLAP
:: .: ::.. : .. ...:. . . : :..::
CCDS47 RE---------ESTSSGNVSNRK---DETNARDTYVSSFPRAPS----------------
110 120 130
180 190 200 210 220 230
pF1KB7 CYLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVR
:.:::: :: :::.:::.. ::: :.. ....:.::. ::::...:::::.::::
CCDS47 ---TSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVR
140 150 160 170 180 190
240 250 260 270 280 290
pF1KB7 SRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK
:::::::: .::.::.::: : : :.:.:::::::::::.:.:. .:.::::::::::
CCDS47 SRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAK
200 210 220 230 240 250
300 310 320 330 340
pF1KB7 TGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
:::: :::: :.:::::::::.:::::::::::::::.:::::::::::
CCDS47 TGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC
260 270 280 290 300
348 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 09:08:37 2016 done: Sat Nov 5 09:08:38 2016
Total Scan time: 3.010 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]