FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7683, 346 aa
  1>>>pF1KB7683 346 - 346 aa - 346 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2583+/-0.000699; mu= 16.3190+/- 0.042
 mean_var=63.1173+/-12.426, 0's: 0 Z-trim(109.3): 12  B-trim: 14 in 1/52
 Lambda= 0.161436
 statistics sampled from 10790 (10793) to 10790 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.332), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS5248.1 TFB1M gene_id:51106|Hs108|chr6          ( 346) 2294 542.6 1.8e-154


>>CCDS5248.1 TFB1M gene_id:51106|Hs108|chr6               (346 aa)
 initn: 2294 init1: 2294 opt: 2294  Z-score: 2886.9  bits: 542.6 E(32554): 1.8e-154
Smith-Waterman score: 2294; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)

               10        20        30        40        50        60
pF1KB7 MAASGKLSTCRLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MAASGKLSTCRLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EVGPGPGGITRSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 EVGPGPGGITRSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 FSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AERLAANTGSKQRSRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 AERLAANTGSKQRSRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PFKLVEKVVQNVFQFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 PFKLVEKVVQNVFQFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHF
              250       260       270       280       290       300

              310       320       330       340      
pF1KB7 KSLCDVYRKMCDEDPQLFAYNFREELKRRKSKNEEKEEDDAENYRL
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 KSLCDVYRKMCDEDPQLFAYNFREELKRRKSKNEEKEEDDAENYRL
              310       320       330       340      




346 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:33:15 2016 done: Fri Nov  4 21:33:16 2016
 Total Scan time:  2.830 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]