FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7682, 406 aa
  1>>>pF1KB7682 406 - 406 aa - 406 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.0344+/-0.00111; mu= -14.8085+/- 0.067
 mean_var=587.0745+/-121.341, 0's: 0 Z-trim(118.6): 108  B-trim: 178 in 1/51
 Lambda= 0.052933
 statistics sampled from 19467 (19579) to 19467 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.846), E-opt: 0.2 (0.601), width:  16
 Scan time:  3.020

The best scores are:                                      opt bits E(32554)
CCDS1075.1 PYGO2 gene_id:90780|Hs108|chr1          ( 406) 3000 243.1 3.4e-64


>>CCDS1075.1 PYGO2 gene_id:90780|Hs108|chr1               (406 aa)
 initn: 3000 init1: 3000 opt: 3000  Z-score: 1265.9  bits: 243.1 E(32554): 3.4e-64
Smith-Waterman score: 3000; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406)

               10        20        30        40        50        60
pF1KB7 MAASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYST
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 TSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 GTPDANSLAPPGKAGGGSGPQPPPGLVYPCGACRSEVNDDQDAILCEASCQKWFHRECTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GTPDANSLAPPGKAGGGSGPQPPPGLVYPCGACRSEVNDDQDAILCEASCQKWFHRECTG
              310       320       330       340       350       360

              370       380       390       400      
pF1KB7 MTESAYGLLTTEASAVWACDLCLKTKEIQSVYIREGMGQLVAANDG
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MTESAYGLLTTEASAVWACDLCLKTKEIQSVYIREGMGQLVAANDG
              370       380       390       400      




406 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:04:44 2016 done: Sat Nov  5 10:04:44 2016
 Total Scan time:  3.020 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]