FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7671, 338 aa
  1>>>pF1KB7671 338 - 338 aa - 338 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.7805+/-0.000356; mu= -1.2723+/- 0.022
 mean_var=294.6205+/-60.119, 0's: 0 Z-trim(123.7): 15  B-trim: 104 in 1/60
 Lambda= 0.074721
 statistics sampled from 44054 (44084) to 44054 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.517), width:  16
 Scan time:  9.800

The best scores are:                                      opt bits E(85289)
NP_003214 (OMIM: 600743) transcription factor AP-4 ( 338) 2200 249.7 6.4e-66
XP_011520935 (OMIM: 600743) PREDICTED: transcripti ( 325) 2013 229.6 7.3e-60
XP_011520937 (OMIM: 600743) PREDICTED: transcripti ( 278) 1803 206.9 4.3e-53


>>NP_003214 (OMIM: 600743) transcription factor AP-4 [Ho  (338 aa)
 initn: 2200 init1: 2200 opt: 2200  Z-score: 1304.4  bits: 249.7 E(85289): 6.4e-66
Smith-Waterman score: 2200; 99.7% identity (100.0% similar) in 338 aa overlap (1-338:1-338)

               10        20        30        40        50        60
pF1KB7 MEYFMVPTQKVPSLQHFRKTEKEVIGGLCSLANIPLTPETQRDQERRIRREIANSNERRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MEYFMVPTQKVPSLQHFRKTEKEVIGGLCSLANIPLTPETQRDQERRIRREIANSNERRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 MQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQHLRTQLLPPPAPTHHPTVIVPAP
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_003 AHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQLLPPPAPTHHPTVIVPAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PPPPSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIEGTQEKQELEEEQRRAVIVKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PPPPSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIEGTQEKQELEEEQRRAVIVKP
              250       260       270       280       290       300

              310       320       330        
pF1KB7 VRSCPEAPTSDTASDSEASDSDAMDQSREEPSGDGELP
       ::::::::::::::::::::::::::::::::::::::
NP_003 VRSCPEAPTSDTASDSEASDSDAMDQSREEPSGDGELP
              310       320       330        

>>XP_011520935 (OMIM: 600743) PREDICTED: transcription f  (325 aa)
 initn: 2013 init1: 2013 opt: 2013  Z-score: 1195.7  bits: 229.6 E(85289): 7.3e-60
Smith-Waterman score: 2013; 97.8% identity (99.1% similar) in 317 aa overlap (22-338:9-325)

               10        20        30        40        50        60
pF1KB7 MEYFMVPTQKVPSLQHFRKTEKEVIGGLCSLANIPLTPETQRDQERRIRREIANSNERRR
                            ..:. :  :::::::::::::::::::::::::::::::
XP_011              MHSIKGLCRRVLPGQFSLANIPLTPETQRDQERRIRREIANSNERRR
                            10        20        30        40       

               70        80        90       100       110       120
pF1KB7 MQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQEL
        50        60        70        80        90       100       

              130       140       150       160       170       180
pF1KB7 SGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLE
       110       120       130       140       150       160       

              190       200       210       220       230       240
pF1KB7 AHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQHLRTQLLPPPAPTHHPTVIVPAP
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
XP_011 AHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQLLPPPAPTHHPTVIVPAP
       170       180       190       200       210       220       

              250       260       270       280       290       300
pF1KB7 PPPPSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIEGTQEKQELEEEQRRAVIVKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPPPSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIEGTQEKQELEEEQRRAVIVKP
       230       240       250       260       270       280       

              310       320       330        
pF1KB7 VRSCPEAPTSDTASDSEASDSDAMDQSREEPSGDGELP
       ::::::::::::::::::::::::::::::::::::::
XP_011 VRSCPEAPTSDTASDSEASDSDAMDQSREEPSGDGELP
       290       300       310       320     

>>XP_011520937 (OMIM: 600743) PREDICTED: transcription f  (278 aa)
 initn: 1803 init1: 1803 opt: 1803  Z-score: 1074.2  bits: 206.9 E(85289): 4.3e-53
Smith-Waterman score: 1803; 99.6% identity (100.0% similar) in 278 aa overlap (61-338:1-278)

               40        50        60        70        80        90
pF1KB7 LANIPLTPETQRDQERRIRREIANSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQ
                                     ::::::::::::::::::::::::::::::
XP_011                               MQSINAGFQSLKTLIPHTDGEKLSKAAILQ
                                             10        20        30

              100       110       120       130       140       150
pF1KB7 QTAEYIFSLEQEKTRLLQQNTQLKRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QTAEYIFSLEQEKTRLLQQNTQLKRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAED
               40        50        60        70        80        90

              160       170       180       190       200       210
pF1KB7 LRREMIELRQQLDKERSVRMMLEEQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRREMIELRQQLDKERSVRMMLEEQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQE
              100       110       120       130       140       150

              220       230       240       250       260       270
pF1KB7 KLEREQQHLRTQLLPPPAPTHHPTVIVPAPPPPPSHHINVVTMGPSSVINSVSTSRQNLD
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLEREQQQLRTQLLPPPAPTHHPTVIVPAPPPPPSHHINVVTMGPSSVINSVSTSRQNLD
              160       170       180       190       200       210

              280       290       300       310       320       330
pF1KB7 TIVQAIQHIEGTQEKQELEEEQRRAVIVKPVRSCPEAPTSDTASDSEASDSDAMDQSREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TIVQAIQHIEGTQEKQELEEEQRRAVIVKPVRSCPEAPTSDTASDSEASDSDAMDQSREE
              220       230       240       250       260       270

               
pF1KB7 PSGDGELP
       ::::::::
XP_011 PSGDGELP
               




338 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:28:22 2016 done: Fri Nov  4 21:28:23 2016
 Total Scan time:  9.800 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]