FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7671, 338 aa
  1>>>pF1KB7671 338 - 338 aa - 338 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0406+/-0.000907; mu= 2.8914+/- 0.055
 mean_var=270.0270+/-54.353, 0's: 0 Z-trim(115.8): 10  B-trim: 17 in 1/53
 Lambda= 0.078050
 statistics sampled from 16354 (16361) to 16354 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.503), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS10510.1 TFAP4 gene_id:7023|Hs108|chr16         ( 338) 2200 260.1 1.9e-69


>>CCDS10510.1 TFAP4 gene_id:7023|Hs108|chr16              (338 aa)
 initn: 2200 init1: 2200 opt: 2200  Z-score: 1360.4  bits: 260.1 E(32554): 1.9e-69
Smith-Waterman score: 2200; 99.7% identity (100.0% similar) in 338 aa overlap (1-338:1-338)

               10        20        30        40        50        60
pF1KB7 MEYFMVPTQKVPSLQHFRKTEKEVIGGLCSLANIPLTPETQRDQERRIRREIANSNERRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEYFMVPTQKVPSLQHFRKTEKEVIGGLCSLANIPLTPETQRDQERRIRREIANSNERRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 MQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQHLRTQLLPPPAPTHHPTVIVPAP
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS10 AHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQLLPPPAPTHHPTVIVPAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PPPPSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIEGTQEKQELEEEQRRAVIVKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PPPPSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIEGTQEKQELEEEQRRAVIVKP
              250       260       270       280       290       300

              310       320       330        
pF1KB7 VRSCPEAPTSDTASDSEASDSDAMDQSREEPSGDGELP
       ::::::::::::::::::::::::::::::::::::::
CCDS10 VRSCPEAPTSDTASDSEASDSDAMDQSREEPSGDGELP
              310       320       330        




338 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:28:21 2016 done: Fri Nov  4 21:28:22 2016
 Total Scan time:  2.660 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]