Result of FASTA (ccds) for
pF1KB7670
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7670, 395 aa
1>>>pF1KB7670 395 - 395 aa - 395 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6932+/-0.000901; mu= 14.1469+/- 0.055
mean_var=220.1901+/-47.068, 0's: 0 Z-trim(113.6): 167 B-trim: 509 in 1/50
Lambda= 0.086432
statistics sampled from 14066 (14259) to 14066 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.438), width: 16
Scan time: 2.890
The best scores are: opt bits E(32554)
CCDS6866.2 LMX1B gene_id:4010|Hs108|chr9 ( 395) 2745 354.8 7.9e-98
CCDS55342.1 LMX1B gene_id:4010|Hs108|chr9 ( 402) 2721 351.8 6.4e-97
CCDS55343.1 LMX1B gene_id:4010|Hs108|chr9 ( 406) 2075 271.3 1.1e-72
CCDS1247.1 LMX1A gene_id:4009|Hs108|chr1 ( 382) 1722 227.2 1.9e-59
CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 ( 359) 621 89.9 4e-18
CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 ( 349) 562 82.5 6.5e-16
CCDS9171.1 LHX5 gene_id:64211|Hs108|chr12 ( 402) 481 72.5 7.7e-13
CCDS11316.1 LHX1 gene_id:3975|Hs108|chr17 ( 406) 472 71.4 1.7e-12
CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1 ( 390) 470 71.1 2e-12
CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 ( 397) 455 69.3 7.2e-12
CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 ( 402) 429 66.0 6.9e-11
CCDS58008.1 LHX8 gene_id:431707|Hs108|chr1 ( 346) 425 65.4 8.9e-11
CCDS30756.1 LHX8 gene_id:431707|Hs108|chr1 ( 356) 425 65.5 9.1e-11
>>CCDS6866.2 LMX1B gene_id:4010|Hs108|chr9 (395 aa)
initn: 2745 init1: 2745 opt: 2745 Z-score: 1869.8 bits: 354.8 E(32554): 7.9e-98
Smith-Waterman score: 2745; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395)
10 20 30 40 50 60
pF1KB7 MDIATGPESLERCFPRGQTDCAKMLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MDIATGPESLERCFPRGQTDCAKMLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 RPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCME
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 KIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 KIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 SSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQEVLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQEVLSS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 RMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGNDSIFHDIDSDTSLTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 RMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGNDSIFHDIDSDTSLTS
310 320 330 340 350 360
370 380 390
pF1KB7 LSDCFLGSSDVGSLQARVGNPIDRLYSMQSSYFAS
:::::::::::::::::::::::::::::::::::
CCDS68 LSDCFLGSSDVGSLQARVGNPIDRLYSMQSSYFAS
370 380 390
>>CCDS55342.1 LMX1B gene_id:4010|Hs108|chr9 (402 aa)
initn: 2416 init1: 2416 opt: 2721 Z-score: 1853.6 bits: 351.8 E(32554): 6.4e-97
Smith-Waterman score: 2721; 98.3% identity (98.3% similar) in 402 aa overlap (1-395:1-402)
10 20 30 40 50 60
pF1KB7 MDIATGPESLERCFPRGQTDCAKMLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDIATGPESLERCFPRGQTDCAKMLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCME
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 KIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 SSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQEVLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQEVLSS
250 260 270 280 290 300
310 320 330 340 350
pF1KB7 RMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPG-------NDSIFHDID
:::::::::::::::::::::::::::::::::::::::::::: :::::::::
CCDS55 RMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGDHMNPYGNDSIFHDID
310 320 330 340 350 360
360 370 380 390
pF1KB7 SDTSLTSLSDCFLGSSDVGSLQARVGNPIDRLYSMQSSYFAS
::::::::::::::::::::::::::::::::::::::::::
CCDS55 SDTSLTSLSDCFLGSSDVGSLQARVGNPIDRLYSMQSSYFAS
370 380 390 400
>>CCDS55343.1 LMX1B gene_id:4010|Hs108|chr9 (406 aa)
initn: 2075 init1: 2075 opt: 2075 Z-score: 1418.2 bits: 271.3 E(32554): 1.1e-72
Smith-Waterman score: 2713; 97.3% identity (97.3% similar) in 406 aa overlap (1-395:1-406)
10 20 30 40 50 60
pF1KB7 MDIATGPESLERCFPRGQTDCAKMLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDIATGPESLERCFPRGQTDCAKMLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCME
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 KIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEV
190 200 210 220 230 240
250 260 270 280 290
pF1KB7 SSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQ-----
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQGEPGP
250 260 270 280 290 300
300 310 320 330 340
pF1KB7 ------EVLSSRMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGNDSIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GQGLGQEVLSSRMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGNDSIF
310 320 330 340 350 360
350 360 370 380 390
pF1KB7 HDIDSDTSLTSLSDCFLGSSDVGSLQARVGNPIDRLYSMQSSYFAS
::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HDIDSDTSLTSLSDCFLGSSDVGSLQARVGNPIDRLYSMQSSYFAS
370 380 390 400
>>CCDS1247.1 LMX1A gene_id:4009|Hs108|chr1 (382 aa)
initn: 1748 init1: 935 opt: 1722 Z-score: 1180.6 bits: 227.2 E(32554): 1.9e-59
Smith-Waterman score: 1722; 67.2% identity (84.0% similar) in 387 aa overlap (24-395:1-382)
10 20 30 40 50
pF1KB7 MDIATGPESLERCFPRGQTDCAKMLDGIKMEEH--ALRPGPATLGVLLGSDCPHPAVCEG
::::.::::. . :... ::: .::::
CCDS12 MLDGLKMEENFQSAIDTSASFSSLLGRAVSPKSVCEG
10 20 30
60 70 80 90 100 110
pF1KB7 CQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGC
::: : ::::.:.:.: :::.:.:::.:.. : :.:..::.::::: ::..:::.::.::
CCDS12 CQRVILDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGC
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB7 MEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSS
.: :::.:::::: . ::::.:::::::::::.:::::::::::::::::::::..:::
CCDS12 FEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB7 VSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASF
::: ::: ::.::.. : :.: : ::....::: .:::::::::::::::::::::
CCDS12 VSPAASDSGKSDDEESLCKSAHGAG---KGTAEEGKDHKRPKRPRTILTTQQRRAFKASF
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB7 EVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRHQQQQE-QQNSQRLGQEV
::::::::::::::::::::::::::::::::::::::::::.::::. :::.:::..
CCDS12 EVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRQQQQQQDQQNTQRLSSAQ
220 230 240 250 260 270
300 310 320 330 340
pF1KB7 L----SSRMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGN-------D
:. :::.: :: : : ::..:.::: : :::::.::::::::::. .
CCDS12 TNGGGSAGMEGIMNPYTAL-PTPQQLLAIEQSVY-SSDPFRQGLTPPQMPGDHMHPYGAE
280 290 300 310 320 330
350 360 370 380 390
pF1KB7 SIFHDIDSD-TSLTSLSDCFLGSSDVGSLQARVGNPIDRLYSMQSSYFAS
.:::.::: :::..:.::::..:..: ::.:::::::.:::::.:::.:
CCDS12 PLFHDLDSDDTSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS
340 350 360 370 380
>>CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 (359 aa)
initn: 436 init1: 307 opt: 621 Z-score: 438.9 bits: 89.9 E(32554): 4e-18
Smith-Waterman score: 636; 34.4% identity (60.5% similar) in 337 aa overlap (51-378:22-345)
30 40 50 60 70
pF1KB7 CAKMLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVNES-SWHEE
: :.: :: : :.:..::. . ::
CCDS10 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAA
10 20 30 40 50
80 90 100 110 120 130
pF1KB7 CLQCAACQQAL--TTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYH
::.:: :.: : : .:. :: : :::.:: .::. ::. :. .. ...:::: . :::
CCDS10 CLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYH
60 70 80 90 100 110
140 150 160 170 180 190
pF1KB7 LGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMK
. :: : :: ::: :::: :.: .:::..:. . .. :: . . :
CCDS10 IECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGAR--GLHL
120 130 140 150 160
200 210 220 230 240 250
pF1KB7 PAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETG
: :.: : :. .. : ::.:. .: ..... . .. .: ..: :. ::
CCDS10 PDAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTG
170 180 190 200 210 220
260 270 280 290 300 310
pF1KB7 LSVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQEVLSSRMEGMMASYTPLAPPQQ
:: ::..:::::.: : :: . .: :.::.:.. . ..:. . :::. .
CCDS10 LSPRVIRVWFQNKRCKDKKKSILMKQLQQQQHSDK-------TSLQGLTG--TPLVAGSP
230 240 250 260 270 280
320 330 340 350 360 370
pF1KB7 QIVAMEQSPYGSSDPFQQGLTPPQMPGNDSIFHDIDSDT--SLTSLSDC-FLGSS---DV
. :.. ::. : : . .. .. :.:. . .:.:.:. ::.: ::
CCDS10 --IRHENAVQGSAVEVQTYQPPWKALSEFALQSDLDQPAFQQLVSFSESGSLGNSSGSDV
290 300 310 320 330
380 390
pF1KB7 GSLQARVGNPIDRLYSMQSSYFAS
::....
CCDS10 TSLSSQLPDTPNSMVPSPVET
340 350
>>CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 (349 aa)
initn: 466 init1: 288 opt: 562 Z-score: 399.2 bits: 82.5 E(32554): 6.5e-16
Smith-Waterman score: 600; 32.3% identity (59.4% similar) in 347 aa overlap (54-391:15-345)
30 40 50 60 70 80
pF1KB7 MLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVNES-SWHEECLQ
..: :: : :....::. . :: ::.
CCDS43 MGDMGDPPKKKRLISLCVGCGNQIHDQYILRVSPDLEWHAACLK
10 20 30 40
90 100 110 120 130 140
pF1KB7 CAACQQALTTSC--YFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGC
:: :.: : :: . :: : :::.:: .:.. ::. : .. ..::::: :::. :
CCDS43 CAECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIEC
50 60 70 80 90 100
150 160 170 180 190 200
pF1KB7 FCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAK
: : .: ::: ::::.:.: :.:..:. :.. .: .: .. .. :
CCDS43 FRCVACSRQLIPGDEFALREDGLFCRADH----DVVERASLGAGDPLSPLHPARPLQMAA
110 120 130 140 150 160
210 220 230 240 250
pF1KB7 GQGS--QSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGL
: : :.:.. : ::.:. .: ..... . .. .: ..: :. :::
CCDS43 EPISARQPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGL
170 180 190 200 210 220
260 270 280 290 300 310
pF1KB7 SVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQEVLSSRMEGMMASYTPLAPPQQQ
: ::..:::::.: : :: . .: :.:: ... . ..:: .. : :...
CCDS43 SPRVIRVWFQNKRCKDKKRSIMMKQLQQQQPNDK-------TNIQGMTGTPMVAASPERH
230 240 250 260 270
320 330 340 350 360 370
pF1KB7 IVAMEQSPYGSSDPFQQGLTPPQMPGNDSIFH-DIDSDT--SLTSLSDCFLGSSDVGSLQ
... .: :. :: .: .. :::. . .:...:. ::...::
CCDS43 DGGLQANPVEV-----QSYQPPWKVLSDFALQSDIDQPAFQQLVNFSEGGPGSNSTGSEV
280 290 300 310 320
380 390
pF1KB7 ARVGNPI-DRLYSMQSSYFAS
: ... . : :: .:
CCDS43 ASMSSQLPDTPNSMVASPIEA
330 340
>>CCDS9171.1 LHX5 gene_id:64211|Hs108|chr12 (402 aa)
initn: 616 init1: 400 opt: 481 Z-score: 344.0 bits: 72.5 E(32554): 7.7e-13
Smith-Waterman score: 700; 35.3% identity (64.5% similar) in 346 aa overlap (56-381:5-333)
30 40 50 60 70 80
pF1KB7 DGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAA
: ::.::: ::::. : . .:: .:.::
CCDS91 MMVHCAGCERPILDRFLLNVLDRAWHIKCVQCCE
10 20 30
90 100 110 120 130 140
pF1KB7 CQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCV
:. :. .:. :. :::::.:. . :..::.:: . :.:...: .: :.::.:: : :
CCDS91 CKTNLSEKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMV
40 50 60 70 80 90
150 160 170 180 190
pF1KB7 CERQLRKGDE-FVLKEGQLLCKGDYE-----KEKDLLS-------SVSPDESDSVKSEDE
:..:: :.: .:. :....:: :: :: .: : :.::: .:..... .
CCDS91 CNKQLSTGEELYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPK
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB7 DGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETL
. : . .. . . .. . .... .: . ::: . ..: ...::.: .. :: :..:: :
CCDS91 ETDNSTSSDKETANNENEEQNSGTKR-RGPRTTIKAKQLETLKAAFAATPKPTRHIREQL
160 170 180 190 200 210
260 270 280 290 300
pF1KB7 AAETGLSVRVVQVWFQNQRAK---MKKL----ARRHQQQQEQQNSQRLGQEVLSSRMEGM
: ::::..::.::::::.:.: ::.: :::: . . . :: .. :.: :
CCDS91 AQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLGGRLDESEMLGS
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB7 MASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGNDSIFHDIDSDTSLTSLSDCF
. :: . : . : : .. : : .: ::.. . . :.:. . :
CCDS91 -TPYTYYGDYQGDYYA----PGSNYDFFAHG--PPSQAQSPA-------DSSFLAASG--
280 290 300 310
370 380 390
pF1KB7 LGSSDVGSLQARVGNPIDRLYSMQSSYFAS
::. .:.:. ...:
CCDS91 PGSTPLGALEPPLAGPHAADNPRFTDMISHPDTPSPEPGLPGTLHPMPGEVFSGGPSPPF
320 330 340 350 360 370
>>CCDS11316.1 LHX1 gene_id:3975|Hs108|chr17 (406 aa)
initn: 605 init1: 404 opt: 472 Z-score: 337.9 bits: 71.4 E(32554): 1.7e-12
Smith-Waterman score: 683; 37.5% identity (65.1% similar) in 307 aa overlap (56-340:4-301)
30 40 50 60 70 80
pF1KB7 DGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAA
: ::.::: ::::. : . .:: .:.::
CCDS11 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCE
10 20 30
90 100 110 120 130 140
pF1KB7 CQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCV
:. :: .:. :. :::::.:. . :..::.:: . :.:...: :: :.::.:: : .
CCDS11 CKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMM
40 50 60 70 80 90
150 160 170 180 190
pF1KB7 CERQLRKGDE-FVLKEGQLLCKGDY------EKEKDLLS-------SVSPDESDSVKSED
:..:: :.: ... :....:: :: ::..: : :.::: .: ...
CCDS11 CNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDA
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB7 EDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRET
.:.. .. . . :. . :.. .: . ::: . ..: ...::.: .. :: :..::
CCDS11 KDSESANVSDKEAGSNENDDQNLGAKR-RGPRTTIKAKQLETLKAAFAATPKPTRHIREQ
160 170 180 190 200 210
260 270 280 290 300
pF1KB7 LAAETGLSVRVVQVWFQNQRAK---MKKL----ARRHQQQQEQQNSQRLGQEVLSSRME-
:: ::::..::.::::::.:.: ::.: :::: .. .:. . : .:.:
CCDS11 LAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHA---FFRSPRRM--RPLVDRLEP
220 230 240 250 260
310 320 330 340 350 360
pF1KB7 GMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGNDSIFHDIDSDTSLTSLSD
: . :.. . . .: :. : : :: ::
CCDS11 GELIPNGPFSF-YGDYQSEYYGPGGNYDFFPQG--PPSSQAQTPVDLPFVPSSGPSGTPL
270 280 290 300 310 320
370 380 390
pF1KB7 CFLGSSDVGSLQARVGNPIDRLYSMQSSYFAS
CCDS11 GGLEHPLPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSV
330 340 350 360 370 380
>>CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1 (390 aa)
initn: 648 init1: 399 opt: 470 Z-score: 336.7 bits: 71.1 E(32554): 2e-12
Smith-Waterman score: 616; 39.2% identity (62.3% similar) in 265 aa overlap (32-292:10-233)
10 20 30 40 50 60
pF1KB7 DIATGPESLERCFPRGQTDCAKMLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQR
: :.. : ::: . .. :. : ::..
CCDS13 MMQSATVPAEGAVKGLPEMLGVPM-QQIPQ---CAGCNQ
10 20 30
70 80 90 100 110 120
pF1KB7 PISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCMEK
: :.:...: . :: ::.:: ::. :. :. : ..:::.:. . :..::..:..
CCDS13 HILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 IAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKE-GQLLCKGDYEKEKDLLSSVS
: ::. : .: . :::: :: : .:.::: :::: : : :.:.:: ::: :.
CCDS13 IPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQ------
100 110 120 130 140
190 200 210 220 230 240
pF1KB7 PDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEV
:.:.. :. ::::: .:..: ...: ...
CCDS13 NDDSEA----------------GA---------------KRPRTTITAKQLETLKNAYKN
150 160 170
250 260 270 280 290
pF1KB7 SSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR---RHQQQQEQQNSQRLGQEV
: :: :.::: :..::::..:::::::::.::: :.: . ::. : .. .:
CCDS13 SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGSS
180 190 200 210 220 230
300 310 320 330 340 350
pF1KB7 LSSRMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGNDSIFHDIDSDTS
CCDS13 KQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVTGGQLMNGSFSMDGTGQS
240 250 260 270 280 290
>>CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 (397 aa)
initn: 749 init1: 377 opt: 455 Z-score: 326.5 bits: 69.3 E(32554): 7.2e-12
Smith-Waterman score: 627; 35.4% identity (60.5% similar) in 339 aa overlap (24-350:1-297)
10 20 30 40 50
pF1KB7 MDIATGPESLERCFPRGQTDCAKMLDGIKMEEHALRPGPATLGVLLGS-DCPHPAVCEGC
:: .:. ::: :.. .: :. . : .: ::
CCDS69 MLLETGLERDRARPGAAAVCTLGGTREIP---LCAGC
10 20 30
60 70 80 90 100 110
pF1KB7 QRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCM
.. : :::.... . :: .::.:. :. :. :. : ...:::.:. . :..::..:.
CCDS69 DQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQ
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB7 EKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKE-GQLLCKGDYEKEKDLLSS
: ::. : :: . :::: :: : ::.::: :::: : : ..:.::.::: :.
CCDS69 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQ----
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB7 VSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASF
:.... ::::: .:..: ...:...
CCDS69 ---REAEATA-------------------------------KRPRTTITAKQLETLKSAY
160 170
240 250 260 270 280 290
pF1KB7 EVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR---RHQQQQEQQNSQRL--
..: :: :.::: :..::::..:::::::::.::: :.: . :.. : .: .:
CCDS69 NTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRG
180 190 200 210 220 230
300 310 320 330 340
pF1KB7 GQEVLSSRMEGMMASYTPLAPPQQQIVAMEQSP----YGS-SDPFQQGLTPPQMPGNDSI
:.. .. .. . : . .. :.. .: :..: ::: ..: : : :: :.
CCDS69 GSKSDKDSVQEGQDSDAEVSFPDEPSLA-EMGPANGLYGSLGEPTQALGRPSGALGNFSL
240 250 260 270 280 290
350 360 370 380 390
pF1KB7 FHDIDSDTSLTSLSDCFLGSSDVGSLQARVGNPIDRLYSMQSSYFAS
:
CCDS69 EHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGP
300 310 320 330 340 350
395 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 22:19:07 2016 done: Sat Nov 5 22:19:08 2016
Total Scan time: 2.890 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]