FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7663, 336 aa
  1>>>pF1KB7663 336 - 336 aa - 336 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9043+/-0.00116; mu= 9.8244+/- 0.070
 mean_var=162.0400+/-34.710, 0's: 0 Z-trim(106.9): 103  B-trim: 73 in 1/50
 Lambda= 0.100754
 statistics sampled from 9151 (9247) to 9151 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.284), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS1365.1 RNF2 gene_id:6045|Hs108|chr1            ( 336) 2206 332.8 2.4e-91
CCDS34424.1 RING1 gene_id:6015|Hs108|chr6          ( 406)  882 140.5 2.3e-33


>>CCDS1365.1 RNF2 gene_id:6045|Hs108|chr1                 (336 aa)
 initn: 2206 init1: 2206 opt: 2206  Z-score: 1753.5  bits: 332.8 E(32554): 2.4e-91
Smith-Waterman score: 2206; 100.0% identity (100.0% similar) in 336 aa overlap (1-336:1-336)

               10        20        30        40        50        60
pF1KB7 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAMAIDPVMDGASEIELVFRPHPTLMEKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAMAIDPVMDGASEIELVFRPHPTLMEKD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASG
              250       260       270       280       290       300

              310       320       330      
pF1KB7 QFTVLNGSFSLELVSEKYWKVNKPMELYYAPTKEHK
       ::::::::::::::::::::::::::::::::::::
CCDS13 QFTVLNGSFSLELVSEKYWKVNKPMELYYAPTKEHK
              310       320       330      

>>CCDS34424.1 RING1 gene_id:6015|Hs108|chr6               (406 aa)
 initn: 1379 init1: 872 opt: 882  Z-score: 712.4  bits: 140.5 E(32554): 2.3e-33
Smith-Waterman score: 1083; 59.7% identity (73.9% similar) in 310 aa overlap (11-280:8-315)

               10        20        30        40        50        60
pF1KB7 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN
                 :  :::::::::::.::::::: :: ::.:::::::::::::::::::::
CCDS34    MTTPANAQNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKN
                  10        20        30        40        50       

               70        80        90       100       110       120
pF1KB7 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY
       ::::::::::::.:::.::::::::::::::::::::::::::::::::::::::::.::
CCDS34 TMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEY
        60        70        80        90       100       110       

              130       140       150             160           170
pF1KB7 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQR------GKKQQ--IENGSG--A
       ::::.::: :... .:::::: ::::::..:::.: ::      :. :   . .: :  .
CCDS34 EAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPG
       120       130       140       150       160       170       

              180       190                              200       
pF1KB7 EDNGDSSHCSNASTHSNQEAGPSNKRTKT-----------------------SDDSGLEL
       : .::.   :. :.  ..  ::. :: .                        :.::: . 
CCDS34 EGEGDGEDVSSDSA-PDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRG
       180       190        200       210       220       230      

       210       220              230       240       250       260
pF1KB7 DNNNAAMAIDPVMDGA-------SEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLS
        . ...    :   ::       .:::::::::: :.:: .  ::::.::.:::::::::
CCDS34 GTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLS
        240       250       260       270       280       290      

              270       280       290       300       310       320
pF1KB7 KYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTVLNGSFSLELVSEKYWK
       ::::.:.:::. :.. :...                                        
CCDS34 KYLALRIALER-RQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEG
        300        310       320       330       340       350     




336 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:09:19 2016 done: Fri Nov  4 09:09:19 2016
 Total Scan time:  2.740 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]