FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7657, 334 aa
  1>>>pF1KB7657 334 - 334 aa - 334 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4404+/-0.000344; mu= -6.5345+/- 0.021
 mean_var=276.1983+/-56.756, 0's: 0 Z-trim(124.3): 1  B-trim: 1581 in 1/54
 Lambda= 0.077173
 statistics sampled from 45793 (45794) to 45793 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.817), E-opt: 0.2 (0.537), width:  16
 Scan time: 10.540

The best scores are:                                      opt bits E(85289)
NP_003074 (OMIM: 605076) snRNA-activating protein  ( 334) 2215 259.1 9.7e-69


>>NP_003074 (OMIM: 605076) snRNA-activating protein comp  (334 aa)
 initn: 2215 init1: 2215 opt: 2215  Z-score: 1355.1  bits: 259.1 E(85289): 9.7e-69
Smith-Waterman score: 2215; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)

               10        20        30        40        50        60
pF1KB7 MKPPPRRRAAPARYLGEVTGPATWSAREKRQLVRLLQARQGQPEPDATELARELRGRSEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MKPPPRRRAAPARYLGEVTGPATWSAREKRQLVRLLQARQGQPEPDATELARELRGRSEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EIRVFLQQLKGRVAREAIQKVHPGGLQGPRRREAQPPAPIEVWTDLAEKITGPLEEALAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EIRVFLQQLKGRVAREAIQKVHPGGLQGPRRREAQPPAPIEVWTDLAEKITGPLEEALAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AFSQVLTIAATEPVTLLHSKPPKPTQARGKPLLLSAPGGQEDPAPEIPSSAPAAPSSAPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AFSQVLTIAATEPVTLLHSKPPKPTQARGKPLLLSAPGGQEDPAPEIPSSAPAAPSSAPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TPDPAPEKPSESSAGPSTEEDFAVDFEKIYKYLSSVSRSGRSPELSAAESAVVLDLLMSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TPDPAPEKPSESSAGPSTEEDFAVDFEKIYKYLSSVSRSGRSPELSAAESAVVLDLLMSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PEELPLLPCTALVEHMTETYLRLTAPQPIPAGGSLGPAAEGDGAGSKAPEETPPATEKAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PEELPLLPCTALVEHMTETYLRLTAPQPIPAGGSLGPAAEGDGAGSKAPEETPPATEKAE
              250       260       270       280       290       300

              310       320       330    
pF1KB7 HSELKSPWQAAGICPLNPFLVPLELLGRAATPAR
       ::::::::::::::::::::::::::::::::::
NP_003 HSELKSPWQAAGICPLNPFLVPLELLGRAATPAR
              310       320       330    




334 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:03:38 2016 done: Sat Nov  5 10:03:40 2016
 Total Scan time: 10.540 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]