FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7657, 334 aa
  1>>>pF1KB7657 334 - 334 aa - 334 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5517+/-0.000846; mu= -1.0353+/- 0.051
 mean_var=254.8657+/-51.585, 0's: 0 Z-trim(116.7): 1  B-trim: 492 in 1/52
 Lambda= 0.080338
 statistics sampled from 17363 (17364) to 17363 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.817), E-opt: 0.2 (0.533), width:  16
 Scan time:  3.470

The best scores are:                                      opt bits E(32554)
CCDS12190.1 SNAPC2 gene_id:6618|Hs108|chr19        ( 334) 2215 268.9 4.1e-72


>>CCDS12190.1 SNAPC2 gene_id:6618|Hs108|chr19             (334 aa)
 initn: 2215 init1: 2215 opt: 2215  Z-score: 1408.2  bits: 268.9 E(32554): 4.1e-72
Smith-Waterman score: 2215; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)

               10        20        30        40        50        60
pF1KB7 MKPPPRRRAAPARYLGEVTGPATWSAREKRQLVRLLQARQGQPEPDATELARELRGRSEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MKPPPRRRAAPARYLGEVTGPATWSAREKRQLVRLLQARQGQPEPDATELARELRGRSEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EIRVFLQQLKGRVAREAIQKVHPGGLQGPRRREAQPPAPIEVWTDLAEKITGPLEEALAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EIRVFLQQLKGRVAREAIQKVHPGGLQGPRRREAQPPAPIEVWTDLAEKITGPLEEALAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AFSQVLTIAATEPVTLLHSKPPKPTQARGKPLLLSAPGGQEDPAPEIPSSAPAAPSSAPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AFSQVLTIAATEPVTLLHSKPPKPTQARGKPLLLSAPGGQEDPAPEIPSSAPAAPSSAPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TPDPAPEKPSESSAGPSTEEDFAVDFEKIYKYLSSVSRSGRSPELSAAESAVVLDLLMSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TPDPAPEKPSESSAGPSTEEDFAVDFEKIYKYLSSVSRSGRSPELSAAESAVVLDLLMSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PEELPLLPCTALVEHMTETYLRLTAPQPIPAGGSLGPAAEGDGAGSKAPEETPPATEKAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PEELPLLPCTALVEHMTETYLRLTAPQPIPAGGSLGPAAEGDGAGSKAPEETPPATEKAE
              250       260       270       280       290       300

              310       320       330    
pF1KB7 HSELKSPWQAAGICPLNPFLVPLELLGRAATPAR
       ::::::::::::::::::::::::::::::::::
CCDS12 HSELKSPWQAAGICPLNPFLVPLELLGRAATPAR
              310       320       330    




334 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:03:38 2016 done: Sat Nov  5 10:03:38 2016
 Total Scan time:  3.470 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]