Result of FASTA (omim) for
pF1KB7651
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7651, 330 aa
1>>>pF1KB7651 330 - 330 aa - 330 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9075+/-0.000434; mu= 9.3356+/- 0.027
mean_var=412.3837+/-86.922, 0's: 0 Z-trim(123.0): 162 B-trim: 2473 in 2/56
Lambda= 0.063157
statistics sampled from 41915 (42132) to 41915 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.494), width: 16
Scan time: 9.320
The best scores are: opt bits E(85289)
NP_005512 (OMIM: 186770) T-cell leukemia homeobox ( 330) 2285 221.8 1.6e-57
NP_001182446 (OMIM: 186770) T-cell leukemia homeob ( 257) 1812 178.5 1.4e-44
XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342) 1355 137.0 5.4e-32
XP_011538047 (OMIM: 186770) PREDICTED: T-cell leuk ( 269) 1346 136.0 8.4e-32
NP_057254 (OMIM: 604240) T-cell leukemia homeobox ( 284) 866 92.4 1.3e-18
NP_066305 (OMIM: 604640) T-cell leukemia homeobox ( 291) 852 91.1 3.1e-18
NP_001418 (OMIM: 131310) homeobox protein engraile ( 333) 310 41.8 0.0024
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 307 41.4 0.0027
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 305 41.5 0.0037
NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303) 296 40.5 0.0056
NP_004089 (OMIM: 269160,600035) homeobox protein E ( 252) 291 39.9 0.007
NP_078777 (OMIM: 142987) homeobox protein Hox-D1 [ ( 328) 292 40.2 0.0075
NP_149416 (OMIM: 607808) homeobox protein Nkx-2.4 ( 354) 290 40.0 0.0089
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 287 39.6 0.0099
NP_001417 (OMIM: 131290) homeobox protein engraile ( 392) 289 40.0 0.01
>>NP_005512 (OMIM: 186770) T-cell leukemia homeobox prot (330 aa)
initn: 2285 init1: 2285 opt: 2285 Z-score: 1153.5 bits: 221.8 E(85289): 1.6e-57
Smith-Waterman score: 2285; 100.0% identity (100.0% similar) in 330 aa overlap (1-330:1-330)
10 20 30 40 50 60
pF1KB7 MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWMESN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWMESN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 RRYTKDRFTGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RRYTKDRFTGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 TDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSLAQPLPADPLCVHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSLAQPLPADPLCVHN
250 260 270 280 290 300
310 320 330
pF1KB7 SSLFALQNLQPWSDDSTKITSVTSVASACE
::::::::::::::::::::::::::::::
NP_005 SSLFALQNLQPWSDDSTKITSVTSVASACE
310 320 330
>>NP_001182446 (OMIM: 186770) T-cell leukemia homeobox p (257 aa)
initn: 1812 init1: 1812 opt: 1812 Z-score: 921.6 bits: 178.5 E(85289): 1.4e-44
Smith-Waterman score: 1812; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KB7 MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWMESN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWMESN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 RRYTKDRFTGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRYTKDRFTGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 TDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSLAQPLPADPLCVHN
:::::::::::::::::
NP_001 TDAQVKTWFQNRRTKWR
250
>>XP_011538046 (OMIM: 186770) PREDICTED: T-cell leukemia (342 aa)
initn: 1346 init1: 1346 opt: 1355 Z-score: 695.4 bits: 137.0 E(85289): 5.4e-32
Smith-Waterman score: 2251; 96.5% identity (96.5% similar) in 342 aa overlap (1-330:1-342)
10 20 30 40 50 60
pF1KB7 MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWMESN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWMESN
130 140 150 160 170 180
190 200 210 220
pF1KB7 RRYTKDRFT------------GHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLAS
::::::::: :::::::::::::::::::::::::::::::::::::::
XP_011 RRYTKDRFTVALSPFTVTRRIGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLAS
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB7 AERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSLA
250 260 270 280 290 300
290 300 310 320 330
pF1KB7 QPLPADPLCVHNSSLFALQNLQPWSDDSTKITSVTSVASACE
::::::::::::::::::::::::::::::::::::::::::
XP_011 QPLPADPLCVHNSSLFALQNLQPWSDDSTKITSVTSVASACE
310 320 330 340
>>XP_011538047 (OMIM: 186770) PREDICTED: T-cell leukemia (269 aa)
initn: 1346 init1: 1346 opt: 1346 Z-score: 691.9 bits: 136.0 E(85289): 8.4e-32
Smith-Waterman score: 1778; 95.5% identity (95.5% similar) in 269 aa overlap (1-257:1-269)
10 20 30 40 50 60
pF1KB7 MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWMESN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWMESN
130 140 150 160 170 180
190 200 210 220
pF1KB7 RRYTKDRFT------------GHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLAS
::::::::: :::::::::::::::::::::::::::::::::::::::
XP_011 RRYTKDRFTVALSPFTVTRRIGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLAS
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB7 AERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSLA
:::::::::::::::::::::::::::::
XP_011 AERAALAKALKMTDAQVKTWFQNRRTKWR
250 260
>>NP_057254 (OMIM: 604240) T-cell leukemia homeobox prot (284 aa)
initn: 1021 init1: 715 opt: 866 Z-score: 455.4 bits: 92.4 E(85289): 1.3e-18
Smith-Waterman score: 1043; 55.5% identity (68.8% similar) in 337 aa overlap (4-327:6-282)
10 20 30 40 50
pF1KB7 MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYG
::::.: : : :::::::::::..:. : : ::: :
NP_057 MEPGMLGPHNL-PHH-EPISFGIDQILSGPETPG----------GGLGLG--------RG
10 20 30 40
60 70 80 90 100 110
pF1KB7 GGGSAAATGAGGAGAYGTGGPGGPG-GPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGG
: : : ::.. : :. : :::: :..:: :: .: ::::
NP_057 GQGH------GENGAFSGGYHGASGYGPAG-----SLAPLPGS--------SGVGPGG--
50 60 70
120 130 140 150 160 170
pF1KB7 GSSGGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWM
:::::::::: : : : : :.::. .. :...:.:::::::
NP_057 -------------VIRVPAHRPLP----VPPP-AGGAPAVPGPSGLGGAGGLAGLTFPWM
80 90 100 110 120
180 190 200 210 220
pF1KB7 ESNRRYTKDRFT------------GHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKY
.:.::..:::.: :::::::::::.:::::::.: :. :::.:: ::::
NP_057 DSGRRFAKDRLTAALSPFSGTRRIGHPYQNRTPPKRKKPRTSFSRSQVLELERRFLRQKY
130 140 150 160 170 180
230 240 250 260 270 280
pF1KB7 LASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQK
:::::::::::::.:::::::::::::::::::::::::::::..:.:.::.:::.:. .
NP_057 LASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLLLHLQQDALPR
190 200 210 220 230 240
290 300 310 320 330
pF1KB7 SLAQPLPADPLCVHNSSLFALQNLQPWSDDSTKITSVTSVASACE
: ::: ::::.::::::::::::::..:. :..::...::
NP_057 PLRPPLPPDPLCLHNSSLFALQNLQPWAEDN-KVASVSGLASVV
250 260 270 280
>>NP_066305 (OMIM: 604640) T-cell leukemia homeobox prot (291 aa)
initn: 1111 init1: 792 opt: 852 Z-score: 448.4 bits: 91.1 E(85289): 3.1e-18
Smith-Waterman score: 1127; 59.6% identity (71.7% similar) in 332 aa overlap (10-325:11-290)
10 20 30 40 50
pF1KB7 MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGG
:: : :::::::::::::::: . .:: : :: ::
NP_066 MEAPASAQTPHP-H-EPISFGIDQILNSPDQDS--APAPRGPDGASYLG-----------
10 20 30 40
60 70 80 90 100 110
pF1KB7 GGSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPL--TGSYNVNMALAGGPGPGGGG
: : : :. :. :.. :: :. :. .:::.::..:: :
NP_066 -------GPPG-GRPGATYPSLPASFAGLGA-----PFEDAGSYSVNLSLA--P------
50 60 70 80
120 130 140 150 160 170
pF1KB7 GSSGGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWM
:::::::::::: ::: : :: ..::..::::. :..: ::.::::
NP_066 -----------AGVIRVPAHRPLPGAV--PPPLPSALPAMPSVPT---VSSLGGLNFPWM
90 100 110 120
180 190 200 210 220
pF1KB7 ESNRRYTKDRFT--------------GHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQ
::.::..::::: :::::::::::.:::::::.:.::::::::::::
NP_066 ESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICELEKRFHRQ
130 140 150 160 170 180
230 240 250 260 270 280
pF1KB7 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAF
:::::::::::::.::::::::::::::::::::::::::::::::::.:..::::..::
NP_066 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLMLQLQHDAF
190 200 210 220 230 240
290 300 310 320 330
pF1KB7 QKSLAQPLPADPLCVHNSSLFALQNLQPWSDDSTKITSVTSVASACE
:::: . . ::::.:::::::::::::: .::.:. .:::.
NP_066 QKSLNDSIQPDPLCLHNSSLFALQNLQPWEEDSSKVPAVTSLV
250 260 270 280 290
>>NP_001418 (OMIM: 131310) homeobox protein engrailed-2 (333 aa)
initn: 348 init1: 170 opt: 310 Z-score: 180.9 bits: 41.8 E(85289): 0.0024
Smith-Waterman score: 320; 34.5% identity (60.2% similar) in 226 aa overlap (61-263:86-306)
40 50 60 70 80 90
pF1KB7 GGCMGPASRLQDGEYGLGCLVGGAYTYGGGGSAAATGAGGAGAYGTGGPGGPGGPAGGGG
:. : ::::. . :.:: :: .: ::::
NP_001 APGNHQHPHRITNFFIDNILRPEFGRRKDAGTCCA-GAGGGRGGGAGGEGGASGAEGGGG
60 70 80 90 100 110
100 110 120 130
pF1KB7 ACSMGPLTGS------YNVNMAL-AGGPGPGGG----GGSSGGAGALSAAGVIRVPAHR-
: . : :: : : :::: :..: : . ::. .:: : . .
NP_001 AGGSEQLLGSGSREPRQNPPCAPGAGGPLPAAGSDSPGDGEGGSKTLSLHGGAKKGGDPG
120 130 140 150 160 170
140 150 160 170 180 190
pF1KB7 -PLAGAVAHPQPLATGLPTVPSVP--AMPGVN-NLTGLTFP-WMESNRRYTKDRFTGHPY
:: :.. . . :. : .: : .. :.: . . .: :. .: :. :: .. :
NP_001 GPLDGSL-KARGLGGGDLSVSSDSDSSQAGANLGAQPMLWPAWVYCTR-YS-DRPSSGP-
180 190 200 210 220 230
200 210 220 230 240
pF1KB7 QNRTPPKK------KKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKT
..: : :: :.:::.:: :. .:. .:. ..::. .: .::. :.....:.:
NP_001 RSRKPKKKNPNKEDKRPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKI
240 250 260 270 280 290
250 260 270 280 290 300
pF1KB7 WFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSLAQPLPADPLCVHNSSLFALQ
::::.:.: .. :...
NP_001 WFQNKRAKIKKATGNKNTLAVHLMAQGLYNHSTTAKEGKSDSE
300 310 320 330
>>NP_000200 (OMIM: 125853,260370,600733,606176,606392) p (283 aa)
initn: 236 init1: 236 opt: 307 Z-score: 180.1 bits: 41.4 E(85289): 0.0027
Smith-Waterman score: 307; 32.0% identity (56.9% similar) in 197 aa overlap (111-295:49-244)
90 100 110 120 130 140
pF1KB7 GPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSSGGAGALSAAGVIRVPAHRPL
: ::. :. :. . . : :
NP_000 AFQRGPAPEFSASPPACLYMGRQPPPPPPHPFPGALGALEQGSPPDISPYEVPPLADDPA
20 30 40 50 60 70
150 160 170 180 190
pF1KB7 AGAVAHPQPLATGLPTVPSVP----AMPGV---NNLTGLTFPWMESNRRYT-KDRFTGHP
.. . : : .:: :. : : ::: : . : ::::.:.. .. : ...:
NP_000 VAHLHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGA
80 90 100 110 120 130
200 210 220 230 240 250
pF1KB7 YQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNR
: . : ..:. ::..:: :. ::::.: .::.. .:. :: :..:. ..: :::::
NP_000 YAAE-PEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNR
140 150 160 170 180 190
260 270 280 290 300
pF1KB7 RTKWRRQTAEEREAERQQANRILLQLQQEAFQKS----LAQPLPADPLCVHNSSLFALQN
: ::... ..: . .. . . .:. : :: : : :
NP_000 RMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPPPPPPGGAVPPAAPVAAR
200 210 220 230 240 250
310 320 330
pF1KB7 LQPWSDDSTKITSVTSVASACE
NP_000 EGRLPPGLSASPQPSSVAPRRPQEPR
260 270 280
>>NP_005506 (OMIM: 142994,176450) motor neuron and pancr (401 aa)
initn: 312 init1: 240 opt: 305 Z-score: 177.8 bits: 41.5 E(85289): 0.0037
Smith-Waterman score: 323; 35.4% identity (58.7% similar) in 223 aa overlap (67-270:98-314)
40 50 60 70 80 90
pF1KB7 ASRLQDGEYGLGCLVGGAYTYGGGGSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGP
::::.:. :: ::: : :.: . .
NP_005 APADRLRAESPSPPRLLAAHCALLPKPGFLGAGGGGGGTGGGHGGPHHHAHPGAAAAAAA
70 80 90 100 110 120
100 110 120 130 140
pF1KB7 LTGSYNVNMALAGGPGPG-GGGGSSGGAGALSAAGVIRVPAHRPLAGAVA------HPQP
... : ::: . : ::..:::: . :.. :.. :.:.: ::
NP_005 AAAA-----AAAGGLALGLHPGGAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPA-
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB7 LATGLPTVPSV-PAMPGVNNLTGL-TFP---WME-SNRRYTKDRFTGHPYQNRTP--PKK
:. . : : .. :: :. : :: :.. :. . .. : .. :
NP_005 LSYSYPQVQGAHPAHPADPIKLGAGTFQLDQWLRASTAGMILPKMPDFNSQAQSNLLGKC
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB7 KKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRR-QT
..:::.:: :. :::..:. .:::. .: .: .: .:..::: :::::: ::.: .
NP_005 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK
250 260 270 280 290 300
270 280 290 300 310
pF1KB7 AEER---EAERQQANRILLQLQQEAFQKSLAQPLPADPLCVHNSSLFALQNLQPWSDDST
:.:. :::.:.
NP_005 AKEQAAQEAEKQKGGGGGAGKGGAEEPGAEELLGPPAPGDKGSGRRLRDLRDSDPEEDED
310 320 330 340 350 360
>>NP_002439 (OMIM: 106600,142983,189500,608874) homeobox (303 aa)
initn: 266 init1: 205 opt: 296 Z-score: 174.4 bits: 40.5 E(85289): 0.0056
Smith-Waterman score: 296; 28.1% identity (53.1% similar) in 288 aa overlap (34-304:1-272)
10 20 30 40 50 60
pF1KB7 LGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGGGSA
:.::. . . :. .. .:::..
NP_002 MAPAADMTSLPLGVKVEDSAFGKPAGGGAG
10 20 30
70 80 90 100 110 120
pF1KB7 AATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSSGGA
: .:..: : . :. . : ...: ..:. .: ::. .. . .
NP_002 QAPSAAAATAAAMGADEEGAKP-------KVSPSLLPFSVEALMADHRKPGAKESALAPS
40 50 60 70 80
130 140 150 160 170
pF1KB7 GALSAAGVIRVPAHRPLAG-----AVAHPQPLAT----GLPTVPSVPAMPGVNNLTGLTF
...::: : : .. : . :.::. :: .: . . .
NP_002 EGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERT
90 100 110 120 130 140
180 190 200 210 220
pF1KB7 PWMESNRRYTKDRFTGHPYQNRTPP-----KKK---KPRTSFTRLQICELEKRFHRQKYL
:::.: ::. : . .:: :.: :::: :: :. ::..:....::
NP_002 PWMQS------PRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYL
150 160 170 180 190
230 240 250 260 270 280
pF1KB7 ASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKS
. :::: ....:..:..::: ::::::.: .: : : .. :. .: :: :
NP_002 SIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPML---PPAAFGLS
200 210 220 230 240 250
290 300 310 320 330
pF1KB7 LAQPLPADPLCVHNSSLFALQNLQPWSDDSTKITSVTSVASACE
. :: . ..::.
NP_002 FPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMYHLT
260 270 280 290 300
330 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:25:16 2016 done: Fri Nov 4 21:25:17 2016
Total Scan time: 9.320 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]