FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7646, 390 aa
  1>>>pF1KB7646 390 - 390 aa - 390 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3331+/-0.0011; mu= -1.8176+/- 0.067
 mean_var=353.4091+/-70.543, 0's: 0 Z-trim(114.7): 15  B-trim: 0 in 0/54
 Lambda= 0.068224
 statistics sampled from 15218 (15233) to 15218 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.468), width:  16
 Scan time:  3.280

The best scores are:                                      opt bits E(32554)
CCDS7842.1 TSG101 gene_id:7251|Hs108|chr11         ( 390) 2604 269.6 3.6e-72
CCDS73266.1 UEVLD gene_id:55293|Hs108|chr11        ( 215)  566 68.7 5.7e-12
CCDS7843.1 UEVLD gene_id:55293|Hs108|chr11         ( 379)  566 69.0 8.4e-12
CCDS41624.1 UEVLD gene_id:55293|Hs108|chr11        ( 471)  566 69.0 9.8e-12


>>CCDS7842.1 TSG101 gene_id:7251|Hs108|chr11              (390 aa)
 initn: 2604 init1: 2604 opt: 2604  Z-score: 1409.3  bits: 269.6 E(32554): 3.6e-72
Smith-Waterman score: 2604; 100.0% identity (100.0% similar) in 390 aa overlap (1-390:1-390)

               10        20        30        40        50        60
pF1KB7 MAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QSDLLGLIQVMIVVFGDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 QSDLLGLIQVMIVVFGDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 NPSGYPGCPYPPGGPYPATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLRW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 NPSGYPGCPYPPGGPYPATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLRW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 ALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFL
              310       320       330       340       350       360

              370       380       390
pF1KB7 KHVRLLSRKQFQLRALMQKARKTAGLSDLY
       ::::::::::::::::::::::::::::::
CCDS78 KHVRLLSRKQFQLRALMQKARKTAGLSDLY
              370       380       390

>>CCDS73266.1 UEVLD gene_id:55293|Hs108|chr11             (215 aa)
 initn: 565 init1: 565 opt: 566  Z-score: 328.4  bits: 68.7 E(32554): 5.7e-12
Smith-Waterman score: 566; 49.7% identity (80.0% similar) in 165 aa overlap (8-172:8-167)

               10        20        30        40        50        60
pF1KB7 MAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP
              :.....:::.:::::.:  :: ...  .:  .:.:::.:.:...:.:.:::::
CCDS73 MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP
       : :.:::::::: .:.::..:. :::::.:::..: : .::::::.:.::::::..:.::
CCDS73 VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QSDLLGLIQVMIVVFGDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPP
       .: ..:::. ::. : .: :..:  .:.:    :.      .:.  .  :.:        
CCDS73 KSVIVGLIKEMIAKFQEELPMYS--LSSSDEARQVDL---LAYIAKITEGVSDTNSKSWA
              130       140         150          160       170     

              190       200       210       220       230       240
pF1KB7 NPSGYPGCPYPPGGPYPATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLRW
                                                                   
CCDS73 NHENKTVNKITVVGGGELGIACTLAISAKVESRSVTQAGV                    
         180       190       200       210                         

>>CCDS7843.1 UEVLD gene_id:55293|Hs108|chr11              (379 aa)
 initn: 550 init1: 550 opt: 566  Z-score: 325.3  bits: 69.0 E(32554): 8.4e-12
Smith-Waterman score: 566; 49.7% identity (80.0% similar) in 165 aa overlap (8-172:8-167)

               10        20        30        40        50        60
pF1KB7 MAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP
              :.....:::.:::::.:  :: ...  .:  .:.:::.:.:...:.:.:::::
CCDS78 MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP
       : :.:::::::: .:.::..:. :::::.:::..: : .::::::.:.::::::..:.::
CCDS78 VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QSDLLGLIQVMIVVFGDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPP
       .: ..:::. ::. : .: :..:  .:.:    :.      .:.  .  :.:        
CCDS78 KSVIVGLIKEMIAKFQEELPMYS--LSSSDEARQVDL---LAYIAKITEGVSDTNSKSWA
              130       140         150          160       170     

              190       200       210       220       230       240
pF1KB7 NPSGYPGCPYPPGGPYPATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLRW
                                                                   
CCDS78 NHENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVE
         180       190       200       210       220       230     

>>CCDS41624.1 UEVLD gene_id:55293|Hs108|chr11             (471 aa)
 initn: 550 init1: 550 opt: 566  Z-score: 324.1  bits: 69.0 E(32554): 9.8e-12
Smith-Waterman score: 566; 49.7% identity (80.0% similar) in 165 aa overlap (8-172:8-167)

               10        20        30        40        50        60
pF1KB7 MAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP
              :.....:::.:::::.:  :: ...  .:  .:.:::.:.:...:.:.:::::
CCDS41 MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP
       : :.:::::::: .:.::..:. :::::.:::..: : .::::::.:.::::::..:.::
CCDS41 VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QSDLLGLIQVMIVVFGDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPP
       .: ..:::. ::. : .: :..:  .:.:    :.      .:.  .  :.:        
CCDS41 KSVIVGLIKEMIAKFQEELPMYS--LSSSDEARQVDL---LAYIAKITEGVSDTNSKSWA
              130       140         150          160       170     

              190       200       210       220       230       240
pF1KB7 NPSGYPGCPYPPGGPYPATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLRW
                                                                   
CCDS41 NHENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVE
         180       190       200       210       220       230     




390 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:13:52 2016 done: Fri Nov  4 20:13:53 2016
 Total Scan time:  3.280 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]