Result of FASTA (ccds) for
pF1KB7639
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7639, 326 aa
1>>>pF1KB7639 326 - 326 aa - 326 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3391+/-0.000814; mu= 8.0124+/- 0.049
mean_var=150.6501+/-29.557, 0's: 0 Z-trim(113.5): 11 B-trim: 0 in 0/52
Lambda= 0.104494
statistics sampled from 14118 (14123) to 14118 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.434), width: 16
Scan time: 3.180
The best scores are: opt bits E(32554)
CCDS12597.1 DEDD2 gene_id:162989|Hs108|chr19 ( 326) 2166 337.7 7.9e-93
CCDS59391.1 DEDD2 gene_id:162989|Hs108|chr19 ( 321) 2105 328.5 4.6e-90
CCDS1219.1 DEDD gene_id:9191|Hs108|chr1 ( 318) 828 135.9 4e-32
CCDS81391.1 DEDD gene_id:9191|Hs108|chr1 ( 348) 516 88.9 6.2e-18
>>CCDS12597.1 DEDD2 gene_id:162989|Hs108|chr19 (326 aa)
initn: 2166 init1: 2166 opt: 2166 Z-score: 1780.1 bits: 337.7 E(32554): 7.9e-93
Smith-Waterman score: 2166; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:1-326)
10 20 30 40 50 60
pF1KB7 MALSGSTPAPCWEEDECLDYYGMLSLHRMFEVVGGQLTECELELLAFLLDEAPGAAGGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MALSGSTPAPCWEEDECLDYYGMLSLHRMFEVVGGQLTECELELLAFLLDEAPGAAGGLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RARSGLELLLELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPERYSYGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RARSGLELLLELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPERYSYGTS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QQSEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRRPQALARQLDVFGQATAVLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QQSEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRRPQALARQLDVFGQATAVLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 SRDLGSVVCDIKFSELSYLDAFWGDYLSGALLQALRGVFLTEALREAVGREAVRLLVSVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SRDLGSVVCDIKFSELSYLDAFWGDYLSGALLQALRGVFLTEALREAVGREAVRLLVSVD
250 260 270 280 290 300
310 320
pF1KB7 EADYEAGRRRLLLMEEEGGRRPTEAS
::::::::::::::::::::::::::
CCDS12 EADYEAGRRRLLLMEEEGGRRPTEAS
310 320
>>CCDS59391.1 DEDD2 gene_id:162989|Hs108|chr19 (321 aa)
initn: 1170 init1: 1170 opt: 2105 Z-score: 1730.5 bits: 328.5 E(32554): 4.6e-90
Smith-Waterman score: 2105; 98.5% identity (98.5% similar) in 326 aa overlap (1-326:1-321)
10 20 30 40 50 60
pF1KB7 MALSGSTPAPCWEEDECLDYYGMLSLHRMFEVVGGQLTECELELLAFLLDEAPGAAGGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MALSGSTPAPCWEEDECLDYYGMLSLHRMFEVVGGQLTECELELLAFLLDEAPGAAGGLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RARSGLELLLELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPERYSYGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RARSGLELLLELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPERYSYGTS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQ
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS59 SSSKRTEGSCRRRRQSSSSANSQQG-----SPPTKRQRRSRGRPSGGARRRRRGAPAAPQ
130 140 150 160 170
190 200 210 220 230 240
pF1KB7 QQSEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRRPQALARQLDVFGQATAVLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QQSEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRRPQALARQLDVFGQATAVLR
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB7 SRDLGSVVCDIKFSELSYLDAFWGDYLSGALLQALRGVFLTEALREAVGREAVRLLVSVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SRDLGSVVCDIKFSELSYLDAFWGDYLSGALLQALRGVFLTEALREAVGREAVRLLVSVD
240 250 260 270 280 290
310 320
pF1KB7 EADYEAGRRRLLLMEEEGGRRPTEAS
::::::::::::::::::::::::::
CCDS59 EADYEAGRRRLLLMEEEGGRRPTEAS
300 310 320
>>CCDS1219.1 DEDD gene_id:9191|Hs108|chr1 (318 aa)
initn: 851 init1: 551 opt: 828 Z-score: 690.1 bits: 135.9 E(32554): 4e-32
Smith-Waterman score: 849; 45.8% identity (71.3% similar) in 310 aa overlap (12-312:12-309)
10 20 30 40 50
pF1KB7 MALSGSTPAPCWEEDECLDYYGMLSLHRMFEVVGGQLTECELELLAFLL-DEAPGAAGGL
: :.. . .:. ::::::..:: .::. ....:.::. : ::
CCDS12 MAGLKRRASQVWPEEHGEQEHGLYSLHRMFDIVGTHLTHRDVRVLSFLFVDVIDDHERGL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 ARARSGLELLLELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPE---RYS
:.: ..:: :::.:.:::::.: . ::::...::::::... :::: : :. .:
CCDS12 I--RNGRDFLLALERQGRCDESNFRQVLQLLRIITRHDLLPYVTLKRRRAVCPDLVDKYL
70 80 90 100 110
120 130 140 150 160 170
pF1KB7 YGTS---SSSKRTEGSCRRRRQSSSSANSQQGQW--ETGSPPTKRQRRSRGRPSGGARRR
:: . . : : :... . :..: .: .::: . :..:.
CCDS12 EETSIRYVTPRALSDPEPRPPQPSKTVPPHYPVVCCPTSGPQMCSKRPARGRATLGSQRK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB7 RRGAPAAPQQQSEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRRPQALARQLDV
:: . . :. . : :::::::::::::.: ::. .: : . . : ::..
CCDS12 RR----------KSVTPDPKEKQTCDIRLRVRAEYCQHETALQGNVFSNKQDPLERQFER
180 190 200 210 220
240 250 260 270 280 290
pF1KB7 FGQATAVLRSRDLGSVVCDIKFSELSYLDAFWGDYLSGALLQALRGVFLTEALREAVGRE
:.::...:.::::::..::::::::.:::::: ::..:.::.::.:::.:..:..:::.:
CCDS12 FNQANTILKSRDLGSIICDIKFSELTYLDAFWRDYINGSLLEALKGVFITDSLKQAVGHE
230 240 250 260 270 280
300 310 320
pF1KB7 AVRLLVSVDEADYEAGRRRLLLMEEEGGRRPTEAS
:..:::.::: ::: ::..::
CCDS12 AIKLLVNVDEEDYELGRQKLLRNLMLQALP
290 300 310
>>CCDS81391.1 DEDD gene_id:9191|Hs108|chr1 (348 aa)
initn: 852 init1: 506 opt: 516 Z-score: 435.4 bits: 88.9 E(32554): 6.2e-18
Smith-Waterman score: 793; 43.0% identity (67.9% similar) in 330 aa overlap (12-312:12-339)
10 20 30 40 50
pF1KB7 MALSGSTPAPCWEEDECLDYYGMLSLHRMFEVVGGQLTECELELLAFLL-DEAPGAAGGL
: :.. . .:. ::::::..:: .::. ....:.::. : ::
CCDS81 MAGLKRRASQVWPEEHGEQEHGLYSLHRMFDIVGTHLTHRDVRVLSFLFVDVIDDHERGL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 ARARSGLELLLELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPE---RYS
:.: ..:: :::.:.:::::.: . ::::...::::::... :::: : :. .:
CCDS81 I--RNGRDFLLALERQGRCDESNFRQVLQLLRIITRHDLLPYVTLKRRRAVCPDLVDKYL
70 80 90 100 110
120 130 140 150 160 170
pF1KB7 YGTS---SSSKRTEGSCRRRRQSSSSANSQQGQW--ETGSPPTKRQRRSRGRPSGGARRR
:: . . : : :... . :..: .: .::: . :..:.
CCDS81 EETSIRYVTPRALSDPEPRPPQPSKTVPPHYPVVCCPTSGPQMCSKRPARGRATLGSQRK
120 130 140 150 160 170
180 190 200 210
pF1KB7 RRGA--PAAPQQQS---------EPARPSSEGKVTCD---------IRLRVRAEYCEHGP
:: . : ..:. . .: .: : ::::::::::.:
CCDS81 RRKSVTPDPKEKQTCGEEVQGFQRWSRLEGEYKELLGHWAVYAIQYIRLRVRAEYCQHET
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB7 ALEQGVASRRPQALARQLDVFGQATAVLRSRDLGSVVCDIKFSELSYLDAFWGDYLSGAL
::. .: : . . : ::.. :.::...:.::::::..::::::::.:::::: ::..:.:
CCDS81 ALQGNVFSNKQDPLERQFERFNQANTILKSRDLGSIICDIKFSELTYLDAFWRDYINGSL
240 250 260 270 280 290
280 290 300 310 320
pF1KB7 LQALRGVFLTEALREAVGREAVRLLVSVDEADYEAGRRRLLLMEEEGGRRPTEAS
:.::.:::.:..:..:::.::..:::.::: ::: ::..::
CCDS81 LEALKGVFITDSLKQAVGHEAIKLLVNVDEEDYELGRQKLLRNLMLQALP
300 310 320 330 340
326 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:23:10 2016 done: Fri Nov 4 21:23:10 2016
Total Scan time: 3.180 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]