Result of FASTA (omim) for
pF1KB7638
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7638, 381 aa
1>>>pF1KB7638 381 - 381 aa - 381 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.8077+/-0.000294; mu= 6.7785+/- 0.018
mean_var=197.3161+/-39.108, 0's: 0 Z-trim(123.7): 9 B-trim: 644 in 1/58
Lambda= 0.091305
statistics sampled from 43939 (43958) to 43939 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.515), width: 16
Scan time: 10.070
The best scores are: opt bits E(85289)
NP_004998 (OMIM: 180300,601022) NF-kappa-B inhibit ( 381) 2656 361.8 1.5e-99
NP_001138434 (OMIM: 180300,601022) NF-kappa-B inhi ( 358) 2501 341.3 2e-93
NP_001138435 (OMIM: 180300,601022) NF-kappa-B inhi ( 343) 1373 192.7 1.1e-48
NP_001138433 (OMIM: 180300,601022) NF-kappa-B inhi ( 366) 1373 192.8 1.1e-48
>>NP_004998 (OMIM: 180300,601022) NF-kappa-B inhibitor-l (381 aa)
initn: 2656 init1: 2656 opt: 2656 Z-score: 1908.1 bits: 361.8 E(85289): 1.5e-99
Smith-Waterman score: 2656; 99.7% identity (99.7% similar) in 381 aa overlap (1-381:1-381)
10 20 30 40 50 60
pF1KB7 MSNPSPQVPEEEASTSVCRPKSSMASTSRRQRRERRFRRYLSAGRLVRAQALLQRHPGLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSNPSPQVPEEEASTSVCRPKSSMASTSRRQRRERRFRRYLSAGRLVRAQALLQRHPGLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VDAGQPPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPDAYTDFFLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VDAGQPPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPDAYTDFFLPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LSRCPSAMGIKNKDGETPGQILGWGPPWDSAEEEEEDDASKEREWRQKLQGELEDEWQEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LSRCPSAMGIKNKDGETPGQILGWGPPWDSAEEEEEDDASKEREWRQKLQGELEDEWQEV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 MGRFEGDASHETQEPESFSAWSDRLAREHAQKCQQQQREAEGSCRPPRAEGSSQSWRQQE
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
NP_004 MGRFEGDASHETQEPESFSAWSDRLAREHAQKCQQQQREAEGSRRPPRAEGSSQSWRQQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EEQRLFRERARAKEEELRESRARRAQEALGDREPKPTRAGPREEHPRGAGRGSLWRFGDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EEQRLFRERARAKEEELRESRARRAQEALGDREPKPTRAGPREEHPRGAGRGSLWRFGDV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 PWPCPGGGDPEAMAAALVARGPPLEEQGALRRYLRVQQVRWHPDRFLQRFRSQIETWELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PWPCPGGGDPEAMAAALVARGPPLEEQGALRRYLRVQQVRWHPDRFLQRFRSQIETWELG
310 320 330 340 350 360
370 380
pF1KB7 RVMGAVTALSQALNRHAEALK
:::::::::::::::::::::
NP_004 RVMGAVTALSQALNRHAEALK
370 380
>>NP_001138434 (OMIM: 180300,601022) NF-kappa-B inhibito (358 aa)
initn: 2501 init1: 2501 opt: 2501 Z-score: 1798.1 bits: 341.3 E(85289): 2e-93
Smith-Waterman score: 2501; 99.7% identity (99.7% similar) in 358 aa overlap (24-381:1-358)
10 20 30 40 50 60
pF1KB7 MSNPSPQVPEEEASTSVCRPKSSMASTSRRQRRERRFRRYLSAGRLVRAQALLQRHPGLD
:::::::::::::::::::::::::::::::::::::
NP_001 MASTSRRQRRERRFRRYLSAGRLVRAQALLQRHPGLD
10 20 30
70 80 90 100 110 120
pF1KB7 VDAGQPPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPDAYTDFFLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDAGQPPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPDAYTDFFLPL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 LSRCPSAMGIKNKDGETPGQILGWGPPWDSAEEEEEDDASKEREWRQKLQGELEDEWQEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSRCPSAMGIKNKDGETPGQILGWGPPWDSAEEEEEDDASKEREWRQKLQGELEDEWQEV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 MGRFEGDASHETQEPESFSAWSDRLAREHAQKCQQQQREAEGSCRPPRAEGSSQSWRQQE
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
NP_001 MGRFEGDASHETQEPESFSAWSDRLAREHAQKCQQQQREAEGSRRPPRAEGSSQSWRQQE
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 EEQRLFRERARAKEEELRESRARRAQEALGDREPKPTRAGPREEHPRGAGRGSLWRFGDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEQRLFRERARAKEEELRESRARRAQEALGDREPKPTRAGPREEHPRGAGRGSLWRFGDV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB7 PWPCPGGGDPEAMAAALVARGPPLEEQGALRRYLRVQQVRWHPDRFLQRFRSQIETWELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PWPCPGGGDPEAMAAALVARGPPLEEQGALRRYLRVQQVRWHPDRFLQRFRSQIETWELG
280 290 300 310 320 330
370 380
pF1KB7 RVMGAVTALSQALNRHAEALK
:::::::::::::::::::::
NP_001 RVMGAVTALSQALNRHAEALK
340 350
>>NP_001138435 (OMIM: 180300,601022) NF-kappa-B inhibito (343 aa)
initn: 1361 init1: 1361 opt: 1373 Z-score: 995.3 bits: 192.7 E(85289): 1.1e-48
Smith-Waterman score: 2353; 95.5% identity (95.5% similar) in 358 aa overlap (24-381:1-343)
10 20 30 40 50 60
pF1KB7 MSNPSPQVPEEEASTSVCRPKSSMASTSRRQRRERRFRRYLSAGRLVRAQALLQRHPGLD
:::::::::::::::::::::::::::::::::::::
NP_001 MASTSRRQRRERRFRRYLSAGRLVRAQALLQRHPGLD
10 20 30
70 80 90 100 110 120
pF1KB7 VDAGQPPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPDAYTDFFLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDAGQPPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPDAYTDFFLPL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 LSRCPSAMGIKNKDGETPGQILGWGPPWDSAEEEEEDDASKEREWRQKLQGELEDEWQEV
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSRCPSAMGIKNKDGETPGQILGWGPPWDSAEEEEEDDASKEREWRQKLQG---------
100 110 120 130 140
190 200 210 220 230 240
pF1KB7 MGRFEGDASHETQEPESFSAWSDRLAREHAQKCQQQQREAEGSCRPPRAEGSSQSWRQQE
::::::::::::::::::::::::::::::::::::: ::::::::::::::::
NP_001 ------DASHETQEPESFSAWSDRLAREHAQKCQQQQREAEGSRRPPRAEGSSQSWRQQE
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB7 EEQRLFRERARAKEEELRESRARRAQEALGDREPKPTRAGPREEHPRGAGRGSLWRFGDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEQRLFRERARAKEEELRESRARRAQEALGDREPKPTRAGPREEHPRGAGRGSLWRFGDV
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB7 PWPCPGGGDPEAMAAALVARGPPLEEQGALRRYLRVQQVRWHPDRFLQRFRSQIETWELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PWPCPGGGDPEAMAAALVARGPPLEEQGALRRYLRVQQVRWHPDRFLQRFRSQIETWELG
270 280 290 300 310 320
370 380
pF1KB7 RVMGAVTALSQALNRHAEALK
:::::::::::::::::::::
NP_001 RVMGAVTALSQALNRHAEALK
330 340
>>NP_001138433 (OMIM: 180300,601022) NF-kappa-B inhibito (366 aa)
initn: 1361 init1: 1361 opt: 1373 Z-score: 995.0 bits: 192.8 E(85289): 1.1e-48
Smith-Waterman score: 2508; 95.8% identity (95.8% similar) in 381 aa overlap (1-381:1-366)
10 20 30 40 50 60
pF1KB7 MSNPSPQVPEEEASTSVCRPKSSMASTSRRQRRERRFRRYLSAGRLVRAQALLQRHPGLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSNPSPQVPEEEASTSVCRPKSSMASTSRRQRRERRFRRYLSAGRLVRAQALLQRHPGLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VDAGQPPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPDAYTDFFLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDAGQPPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPDAYTDFFLPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LSRCPSAMGIKNKDGETPGQILGWGPPWDSAEEEEEDDASKEREWRQKLQGELEDEWQEV
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSRCPSAMGIKNKDGETPGQILGWGPPWDSAEEEEEDDASKEREWRQKLQG---------
130 140 150 160 170
190 200 210 220 230 240
pF1KB7 MGRFEGDASHETQEPESFSAWSDRLAREHAQKCQQQQREAEGSCRPPRAEGSSQSWRQQE
::::::::::::::::::::::::::::::::::::: ::::::::::::::::
NP_001 ------DASHETQEPESFSAWSDRLAREHAQKCQQQQREAEGSRRPPRAEGSSQSWRQQE
180 190 200 210 220
250 260 270 280 290 300
pF1KB7 EEQRLFRERARAKEEELRESRARRAQEALGDREPKPTRAGPREEHPRGAGRGSLWRFGDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEQRLFRERARAKEEELRESRARRAQEALGDREPKPTRAGPREEHPRGAGRGSLWRFGDV
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB7 PWPCPGGGDPEAMAAALVARGPPLEEQGALRRYLRVQQVRWHPDRFLQRFRSQIETWELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PWPCPGGGDPEAMAAALVARGPPLEEQGALRRYLRVQQVRWHPDRFLQRFRSQIETWELG
290 300 310 320 330 340
370 380
pF1KB7 RVMGAVTALSQALNRHAEALK
:::::::::::::::::::::
NP_001 RVMGAVTALSQALNRHAEALK
350 360
381 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:30:32 2016 done: Fri Nov 4 12:30:34 2016
Total Scan time: 10.070 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]