Result of FASTA (omim) for
pF1KB7627
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7627, 297 aa
1>>>pF1KB7627 297 - 297 aa - 297 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8511+/-0.000346; mu= 13.8808+/- 0.022
mean_var=109.9217+/-22.006, 0's: 0 Z-trim(118.2): 101 B-trim: 52 in 1/53
Lambda= 0.122330
statistics sampled from 30724 (30840) to 30724 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.362), width: 16
Scan time: 7.910
The best scores are: opt bits E(85289)
NP_068555 (OMIM: 300276) tumor necrosis factor rec ( 297) 2092 379.6 4e-105
NP_001186616 (OMIM: 300276) tumor necrosis factor ( 297) 2092 379.6 4e-105
NP_001311135 (OMIM: 300276) tumor necrosis factor ( 299) 2078 377.1 2.2e-104
XP_016885193 (OMIM: 300276) PREDICTED: tumor necro ( 231) 1467 269.2 5.4e-72
NP_001229239 (OMIM: 300276) tumor necrosis factor ( 318) 1288 237.7 2.2e-62
XP_011529303 (OMIM: 300276) PREDICTED: tumor necro ( 318) 1283 236.9 4e-62
XP_011529302 (OMIM: 300276) PREDICTED: tumor necro ( 318) 1283 236.9 4e-62
XP_011529306 (OMIM: 300276) PREDICTED: tumor necro ( 191) 1273 234.9 9.5e-62
XP_011529304 (OMIM: 300276) PREDICTED: tumor necro ( 252) 1273 235.0 1.2e-61
XP_016885195 (OMIM: 300276) PREDICTED: tumor necro ( 198) 1269 234.2 1.6e-61
NP_001311130 (OMIM: 300276) tumor necrosis factor ( 265) 1166 216.1 5.8e-56
XP_016885192 (OMIM: 300276) PREDICTED: tumor necro ( 265) 1161 215.3 1.1e-55
XP_011529308 (OMIM: 300276) PREDICTED: tumor necro ( 170) 1067 198.5 7.7e-51
XP_011529309 (OMIM: 300276) PREDICTED: tumor necro ( 144) 1054 196.1 3.3e-50
XP_011529307 (OMIM: 300276) PREDICTED: tumor necro ( 173) 836 157.7 1.5e-38
NP_001311128 (OMIM: 300276) tumor necrosis factor ( 173) 836 157.7 1.5e-38
XP_011529305 (OMIM: 300276) PREDICTED: tumor necro ( 238) 836 157.9 1.8e-38
XP_016885196 (OMIM: 300276) PREDICTED: tumor necro ( 194) 827 156.2 4.8e-38
XP_016885194 (OMIM: 300276) PREDICTED: tumor necro ( 219) 827 156.2 5.2e-38
XP_005266503 (OMIM: 606122) PREDICTED: tumor necro ( 328) 664 127.6 3.2e-29
XP_016876141 (OMIM: 606122) PREDICTED: tumor necro ( 328) 664 127.6 3.2e-29
NP_001191387 (OMIM: 606122) tumor necrosis factor ( 417) 661 127.2 5.4e-29
NP_683760 (OMIM: 606122) tumor necrosis factor rec ( 417) 661 127.2 5.4e-29
XP_011533448 (OMIM: 606122) PREDICTED: tumor necro ( 423) 661 127.2 5.5e-29
NP_061117 (OMIM: 606122) tumor necrosis factor rec ( 423) 661 127.2 5.5e-29
XP_016876140 (OMIM: 606122) PREDICTED: tumor necro ( 423) 661 127.2 5.5e-29
XP_005266502 (OMIM: 606122) PREDICTED: tumor necro ( 423) 661 127.2 5.5e-29
NP_001311134 (OMIM: 300276) tumor necrosis factor ( 132) 572 111.0 1.3e-24
NP_001311133 (OMIM: 300276) tumor necrosis factor ( 134) 558 108.6 7.1e-24
NP_071731 (OMIM: 129490,224900,604095,612630) tumo ( 448) 250 54.7 3.9e-07
XP_006712267 (OMIM: 129490,224900,604095,612630) P ( 480) 250 54.7 4.1e-07
XP_011508805 (OMIM: 129490,224900,604095,612630) P ( 496) 250 54.7 4.2e-07
XP_011508804 (OMIM: 129490,224900,604095,612630) P ( 528) 250 54.8 4.4e-07
XP_016885197 (OMIM: 300276) PREDICTED: tumor necro ( 107) 216 48.1 9e-06
NP_001311131 (OMIM: 300276) tumor necrosis factor ( 107) 216 48.1 9e-06
NP_116260 (OMIM: 611211) tumor necrosis factor rec ( 430) 203 46.4 0.00012
NP_689408 (OMIM: 611211) tumor necrosis factor rec ( 430) 203 46.4 0.00012
NP_001233 (OMIM: 186711,615122) CD27 antigen precu ( 260) 181 42.3 0.0012
XP_006710681 (OMIM: 602250) PREDICTED: tumor necro ( 239) 179 41.9 0.0015
XP_016875723 (OMIM: 186711,615122) PREDICTED: CD27 ( 358) 181 42.4 0.0015
XP_011539688 (OMIM: 602250) PREDICTED: tumor necro ( 255) 179 41.9 0.0015
NP_001552 (OMIM: 602250) tumor necrosis factor rec ( 255) 179 41.9 0.0015
XP_016875721 (OMIM: 186711,615122) PREDICTED: CD27 ( 405) 181 42.5 0.0017
NP_001056 (OMIM: 142680,191190,614810) tumor necro ( 455) 181 42.5 0.0018
NP_001307548 (OMIM: 134637,601859) tumor necrosis ( 197) 173 40.8 0.0027
NP_690611 (OMIM: 134637,601859) tumor necrosis fac ( 220) 173 40.8 0.0029
NP_690610 (OMIM: 134637,601859) tumor necrosis fac ( 314) 173 41.0 0.0037
NP_000034 (OMIM: 134637,601859) tumor necrosis fac ( 335) 173 41.0 0.0039
XP_011538069 (OMIM: 134637,601859) PREDICTED: tumo ( 350) 173 41.0 0.004
XP_011538068 (OMIM: 134637,601859) PREDICTED: tumo ( 362) 173 41.0 0.0041
>>NP_068555 (OMIM: 300276) tumor necrosis factor recepto (297 aa)
initn: 2092 init1: 2092 opt: 2092 Z-score: 2008.3 bits: 379.6 E(85289): 4e-105
Smith-Waterman score: 2092; 99.7% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KB7 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHKCQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_068 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 DKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMASCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 DKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMASCT
190 200 210 220 230 240
250 260 270 280 290
pF1KB7 SESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTVESTGDRLELNVPFEVPSP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 SESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTVESTGDRLELNVPFEVPSP
250 260 270 280 290
>>NP_001186616 (OMIM: 300276) tumor necrosis factor rece (297 aa)
initn: 2092 init1: 2092 opt: 2092 Z-score: 2008.3 bits: 379.6 E(85289): 4e-105
Smith-Waterman score: 2092; 99.7% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KB7 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHKCQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_001 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 DKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMASCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMASCT
190 200 210 220 230 240
250 260 270 280 290
pF1KB7 SESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTVESTGDRLELNVPFEVPSP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTVESTGDRLELNVPFEVPSP
250 260 270 280 290
>>NP_001311135 (OMIM: 300276) tumor necrosis factor rece (299 aa)
initn: 2078 init1: 1265 opt: 2078 Z-score: 1994.9 bits: 377.1 E(85289): 2.2e-104
Smith-Waterman score: 2078; 99.0% identity (99.3% similar) in 299 aa overlap (1-297:1-299)
10 20 30 40 50 60
pF1KB7 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHKCQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_001 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQR--GGLLQF
:::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
NP_001 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRVAGGLLQF
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 EADKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EADKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMAS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB7 CTSESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTVESTGDRLELNVPFEVPSP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CTSESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTVESTGDRLELNVPFEVPSP
250 260 270 280 290
>>XP_016885193 (OMIM: 300276) PREDICTED: tumor necrosis (231 aa)
initn: 1467 init1: 1467 opt: 1467 Z-score: 1413.5 bits: 269.2 E(85289): 5.4e-72
Smith-Waterman score: 1467; 99.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)
10 20 30 40 50 60
pF1KB7 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHKCQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
XP_016 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEA
::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLSLVEADTPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 DKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMASCT
:::::::::::::::::::::::::
XP_016 DKTAKEESLFPVPPSKETSAESQVSWAPGSLAQLFSLDSVPIPQQQQGPEM
190 200 210 220 230
>>NP_001229239 (OMIM: 300276) tumor necrosis factor rece (318 aa)
initn: 2078 init1: 1265 opt: 1288 Z-score: 1241.0 bits: 237.7 E(85289): 2.2e-62
Smith-Waterman score: 2040; 93.1% identity (93.4% similar) in 318 aa overlap (1-297:1-318)
10 20 30 40 50 60
pF1KB7 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHKCQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_001 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQR--------
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQREKLIIFSD
130 140 150 160 170 180
180 190 200 210
pF1KB7 -------------GGLLQFEADKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILE
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVPASLNLIPEFAGGLLQFEADKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB7 DDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTV
250 260 270 280 290 300
280 290
pF1KB7 ESTGDRLELNVPFEVPSP
::::::::::::::::::
NP_001 ESTGDRLELNVPFEVPSP
310
>>XP_011529303 (OMIM: 300276) PREDICTED: tumor necrosis (318 aa)
initn: 2073 init1: 1260 opt: 1283 Z-score: 1236.3 bits: 236.9 E(85289): 4e-62
Smith-Waterman score: 2035; 92.8% identity (93.4% similar) in 318 aa overlap (1-297:1-318)
10 20 30 40 50 60
pF1KB7 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHKCQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
XP_011 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQR--------
::::::::.:::::::::::::::::::::::::::::::::::::::::::
XP_011 QLSLVEADTPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQREKLIIFSD
130 140 150 160 170 180
180 190 200 210
pF1KB7 -------------GGLLQFEADKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILE
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVPASLNLIPEFAGGLLQFEADKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB7 DDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTV
250 260 270 280 290 300
280 290
pF1KB7 ESTGDRLELNVPFEVPSP
::::::::::::::::::
XP_011 ESTGDRLELNVPFEVPSP
310
>>XP_011529302 (OMIM: 300276) PREDICTED: tumor necrosis (318 aa)
initn: 2073 init1: 1260 opt: 1283 Z-score: 1236.3 bits: 236.9 E(85289): 4e-62
Smith-Waterman score: 2035; 92.8% identity (93.4% similar) in 318 aa overlap (1-297:1-318)
10 20 30 40 50 60
pF1KB7 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHKCQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
XP_011 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQR--------
::::::::.:::::::::::::::::::::::::::::::::::::::::::
XP_011 QLSLVEADTPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQREKLIIFSD
130 140 150 160 170 180
180 190 200 210
pF1KB7 -------------GGLLQFEADKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILE
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVPASLNLIPEFAGGLLQFEADKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB7 DDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTV
250 260 270 280 290 300
280 290
pF1KB7 ESTGDRLELNVPFEVPSP
::::::::::::::::::
XP_011 ESTGDRLELNVPFEVPSP
310
>>XP_011529306 (OMIM: 300276) PREDICTED: tumor necrosis (191 aa)
initn: 1260 init1: 1260 opt: 1273 Z-score: 1229.6 bits: 234.9 E(85289): 9.5e-62
Smith-Waterman score: 1273; 91.6% identity (95.3% similar) in 191 aa overlap (1-191:1-190)
10 20 30 40 50 60
pF1KB7 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHKCQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
XP_011 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEA
::::::::.::::::::::::::::::::::::::::::::::::::::::: :. : .
XP_011 QLSLVEADTPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQREKLIIF-S
130 140 150 160 170
190 200 210 220 230 240
pF1KB7 DKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMASCT
: . .:.:
XP_011 DPVPASLNLIPE
180 190
>>XP_011529304 (OMIM: 300276) PREDICTED: tumor necrosis (252 aa)
initn: 1453 init1: 1260 opt: 1273 Z-score: 1228.0 bits: 235.0 E(85289): 1.2e-61
Smith-Waterman score: 1415; 89.8% identity (90.7% similar) in 226 aa overlap (1-205:1-226)
10 20 30 40 50 60
pF1KB7 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHKCQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
XP_011 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQR--------
::::::::.:::::::::::::::::::::::::::::::::::::::::::
XP_011 QLSLVEADTPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQREKLIIFSD
130 140 150 160 170 180
180 190 200 210
pF1KB7 -------------GGLLQFEADKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILE
:::::::::::::::::::::::::::::::::
XP_011 PVPASLNLIPEFAGGLLQFEADKTAKEESLFPVPPSKETSAESQVSWAPGSLAQLFSLDS
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB7 DDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTV
XP_011 VPIPQQQQGPEM
250
>>XP_016885195 (OMIM: 300276) PREDICTED: tumor necrosis (198 aa)
initn: 1309 init1: 1269 opt: 1269 Z-score: 1225.6 bits: 234.2 E(85289): 1.6e-61
Smith-Waterman score: 1269; 98.3% identity (99.4% similar) in 175 aa overlap (1-175:1-175)
10 20 30 40 50 60
pF1KB7 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHKCQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
XP_016 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEA
::::::::.:::::::::::::::::::::::::::::::::::::::::::: :
XP_016 QLSLVEADTPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGLLGPWQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 DKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMASCT
XP_016 CPVVLSGLCSYTTTAAGA
190
297 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:28:20 2016 done: Sat Nov 5 18:28:21 2016
Total Scan time: 7.910 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]