Result of FASTA (omim) for
pF1KB7619
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7619, 308 aa
1>>>pF1KB7619 308 - 308 aa - 308 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4536+/-0.000337; mu= 14.7511+/- 0.021
mean_var=65.6499+/-13.428, 0's: 0 Z-trim(115.8): 5 B-trim: 1265 in 3/51
Lambda= 0.158291
statistics sampled from 26484 (26489) to 26484 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.311), width: 16
Scan time: 6.630
The best scores are: opt bits E(85289)
NP_001507 (OMIM: 601750) general transcription fac ( 308) 2060 479.0 5.2e-135
NP_001258796 (OMIM: 601750) general transcription ( 267) 1788 416.8 2.3e-116
XP_016874717 (OMIM: 601750) PREDICTED: general tra ( 162) 1094 258.3 7.7e-69
NP_001258797 (OMIM: 601750) general transcription ( 162) 1094 258.3 7.7e-69
NP_001258795 (OMIM: 601750) general transcription ( 265) 1066 252.0 9.9e-67
>>NP_001507 (OMIM: 601750) general transcription factor (308 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 2544.8 bits: 479.0 E(85289): 5.2e-135
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)
10 20 30 40 50 60
pF1KB7 MVSDEDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVSDEDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 KSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 IFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 LILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPVLKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPVLKAK
250 260 270 280 290 300
pF1KB7 KKKLKVSA
::::::::
NP_001 KKKLKVSA
>>NP_001258796 (OMIM: 601750) general transcription fact (267 aa)
initn: 1788 init1: 1788 opt: 1788 Z-score: 2210.0 bits: 416.8 E(85289): 2.3e-116
Smith-Waterman score: 1788; 100.0% identity (100.0% similar) in 267 aa overlap (42-308:1-267)
20 30 40 50 60 70
pF1KB7 VIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLY
::::::::::::::::::::::::::::::
NP_001 MVLGNSHLFMNRSNKLAVIASHIQESRFLY
10 20 30
80 90 100 110 120 130
pF1KB7 PGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTET
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB7 LLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILI
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB7 DACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDY
160 170 180 190 200 210
260 270 280 290 300
pF1KB7 RAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPVLKAKKKKLKVSA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPVLKAKKKKLKVSA
220 230 240 250 260
>>XP_016874717 (OMIM: 601750) PREDICTED: general transcr (162 aa)
initn: 1094 init1: 1094 opt: 1094 Z-score: 1356.9 bits: 258.3 E(85289): 7.7e-69
Smith-Waterman score: 1094; 100.0% identity (100.0% similar) in 162 aa overlap (147-308:1-162)
120 130 140 150 160 170
pF1KB7 DLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMN
::::::::::::::::::::::::::::::
XP_016 MNKEVKDNQEMKSRILVIKAAEDSALQYMN
10 20 30
180 190 200 210 220 230
pF1KB7 FMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB7 QRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPV
100 110 120 130 140 150
300
pF1KB7 LKAKKKKLKVSA
::::::::::::
XP_016 LKAKKKKLKVSA
160
>>NP_001258797 (OMIM: 601750) general transcription fact (162 aa)
initn: 1094 init1: 1094 opt: 1094 Z-score: 1356.9 bits: 258.3 E(85289): 7.7e-69
Smith-Waterman score: 1094; 100.0% identity (100.0% similar) in 162 aa overlap (147-308:1-162)
120 130 140 150 160 170
pF1KB7 DLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMN
::::::::::::::::::::::::::::::
NP_001 MNKEVKDNQEMKSRILVIKAAEDSALQYMN
10 20 30
180 190 200 210 220 230
pF1KB7 FMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB7 QRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPV
100 110 120 130 140 150
300
pF1KB7 LKAKKKKLKVSA
::::::::::::
NP_001 LKAKKKKLKVSA
160
>>NP_001258795 (OMIM: 601750) general transcription fact (265 aa)
initn: 1776 init1: 1066 opt: 1066 Z-score: 1319.0 bits: 252.0 E(85289): 9.9e-67
Smith-Waterman score: 1694; 86.0% identity (86.0% similar) in 308 aa overlap (1-308:1-265)
10 20 30 40 50 60
pF1KB7 MVSDEDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVSDEDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 KSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV
::::::::::::::::::::::::::::::::::::::::::
NP_001 KSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL------------------
130 140 150 160
190 200 210 220 230 240
pF1KB7 IFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQ
:::::::::::::::::::::::::::::::::::
NP_001 -------------------------ACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQ
170 180 190
250 260 270 280 290 300
pF1KB7 LILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPVLKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPVLKAK
200 210 220 230 240 250
pF1KB7 KKKLKVSA
::::::::
NP_001 KKKLKVSA
260
308 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:58:07 2016 done: Fri Nov 4 08:58:08 2016
Total Scan time: 6.630 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]