FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7619, 308 aa
  1>>>pF1KB7619 308 - 308 aa - 308 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3141+/-0.00078; mu= 15.5997+/- 0.047
 mean_var=66.9565+/-13.138, 0's: 0 Z-trim(108.5): 5  B-trim: 5 in 1/50
 Lambda= 0.156739
 statistics sampled from 10228 (10231) to 10228 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.314), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS9252.1 GTF2H3 gene_id:2967|Hs108|chr12         ( 308) 2060 474.4 4.7e-134
CCDS61275.1 GTF2H3 gene_id:2967|Hs108|chr12        ( 267) 1788 412.9 1.4e-115
CCDS73544.1 GTF2H3 gene_id:2967|Hs108|chr12        ( 162) 1094 255.9 1.6e-68


>>CCDS9252.1 GTF2H3 gene_id:2967|Hs108|chr12              (308 aa)
 initn: 2060 init1: 2060 opt: 2060  Z-score: 2520.3  bits: 474.4 E(32554): 4.7e-134
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KB7 MVSDEDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MVSDEDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 ASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 KSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 KSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 IFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 IFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPVLKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 LILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPVLKAK
              250       260       270       280       290       300

               
pF1KB7 KKKLKVSA
       ::::::::
CCDS92 KKKLKVSA
               

>>CCDS61275.1 GTF2H3 gene_id:2967|Hs108|chr12             (267 aa)
 initn: 1788 init1: 1788 opt: 1788  Z-score: 2188.8  bits: 412.9 E(32554): 1.4e-115
Smith-Waterman score: 1788; 100.0% identity (100.0% similar) in 267 aa overlap (42-308:1-267)

              20        30        40        50        60        70 
pF1KB7 VIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLY
                                     ::::::::::::::::::::::::::::::
CCDS61                               MVLGNSHLFMNRSNKLAVIASHIQESRFLY
                                             10        20        30

              80        90       100       110       120       130 
pF1KB7 PGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 PGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTET
               40        50        60        70        80        90

             140       150       160       170       180       190 
pF1KB7 LLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILI
              100       110       120       130       140       150

             200       210       220       230       240       250 
pF1KB7 DACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 DACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDY
              160       170       180       190       200       210

             260       270       280       290       300        
pF1KB7 RAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPVLKAKKKKLKVSA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 RAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPVLKAKKKKLKVSA
              220       230       240       250       260       

>>CCDS73544.1 GTF2H3 gene_id:2967|Hs108|chr12             (162 aa)
 initn: 1094 init1: 1094 opt: 1094  Z-score: 1343.9  bits: 255.9 E(32554): 1.6e-68
Smith-Waterman score: 1094; 100.0% identity (100.0% similar) in 162 aa overlap (147-308:1-162)

        120       130       140       150       160       170      
pF1KB7 DLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMN
                                     ::::::::::::::::::::::::::::::
CCDS73                               MNKEVKDNQEMKSRILVIKAAEDSALQYMN
                                             10        20        30

        180       190       200       210       220       230      
pF1KB7 FMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD
               40        50        60        70        80        90

        240       250       260       270       280       290      
pF1KB7 QRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPV
              100       110       120       130       140       150

        300        
pF1KB7 LKAKKKKLKVSA
       ::::::::::::
CCDS73 LKAKKKKLKVSA
              160  




308 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:58:06 2016 done: Fri Nov  4 08:58:06 2016
 Total Scan time:  2.180 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]