Result of FASTA (ccds) for
pF1KB7607
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7607, 299 aa
1>>>pF1KB7607 299 - 299 aa - 299 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.4781+/-0.000968; mu= -5.1059+/- 0.059
mean_var=369.6996+/-74.145, 0's: 0 Z-trim(116.5): 121 B-trim: 0 in 0/53
Lambda= 0.066704
statistics sampled from 16950 (17076) to 16950 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.525), width: 16
Scan time: 3.120
The best scores are: opt bits E(32554)
CCDS12706.1 CRX gene_id:1406|Hs108|chr19 ( 299) 2047 209.9 1.8e-54
CCDS41960.1 OTX2 gene_id:5015|Hs108|chr14 ( 289) 590 69.7 2.9e-12
CCDS1873.1 OTX1 gene_id:5013|Hs108|chr2 ( 354) 572 68.1 1.1e-11
CCDS9728.1 OTX2 gene_id:5015|Hs108|chr14 ( 297) 564 67.2 1.7e-11
>>CCDS12706.1 CRX gene_id:1406|Hs108|chr19 (299 aa)
initn: 2047 init1: 2047 opt: 2047 Z-score: 1091.2 bits: 209.9 E(32554): 1.8e-54
Smith-Waterman score: 2047; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KB7 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 AGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLSPMVPQLGGPALSPLSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLSPMVPQLGGPALSPLSGP
190 200 210 220 230 240
250 260 270 280 290
pF1KB7 SVGPSLAQSPTSLSGQSYGAYSPVDSLEFKDPTGTWKFTYNPMDPLDYKDQSAWKFQIL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SVGPSLAQSPTSLSGQSYGAYSPVDSLEFKDPTGTWKFTYNPMDPLDYKDQSAWKFQIL
250 260 270 280 290
>>CCDS41960.1 OTX2 gene_id:5015|Hs108|chr14 (289 aa)
initn: 733 init1: 497 opt: 590 Z-score: 333.7 bits: 69.7 E(32554): 2.9e-12
Smith-Waterman score: 925; 52.1% identity (72.5% similar) in 309 aa overlap (1-299:1-289)
10 20 30 40 50 60
pF1KB7 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAK
::.:.. : :.::.:.:. ..::.: .: ::..:::::::::::::.::. :::::::
CCDS41 MMSYLKQPP-YAVNGLSLTTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAK
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 TQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRK
:.:::.. ::::::::::::::::::::::::::::: :::: ::: :.::::.:
CCDS41 TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ-----QQQQQNGGQNKVRPAKKK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 AGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLV
::: . .: . : : ...:: . ... : :::::::: ::: . .
CCDS41 --TSP--AREVSSES-GTSGQFTPPSSTSVPTIASSSAPVSIWSPASISPLSDP-----L
120 130 140 150 160
190 200 210 220 230
pF1KB7 ASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLD--PYLSPMVPQLGGPA--LSP
... : . : :::. ::.. ..:.. .:::.:.: ::.:: :: ::. :::
CCDS41 STSSSCMQRSYPMTYTQASGYS---QGYAGSTSYFGGMDCGSYLTPMHHQLPGPGATLSP
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB7 LSGPSVGPSLAQSPTSLSGQSYGAYS-----PVDSLEFKDPTGTWKFTYNPMDPLDYKDQ
.. .: : :::.::: :.::: : .: :..:: :..::...: : ::::::
CCDS41 MGTNAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLDYKDQTASWKLNFNA-DCLDYKDQ
230 240 250 260 270 280
pF1KB7 -SAWKFQIL
:.::::.:
CCDS41 TSSWKFQVL
>>CCDS1873.1 OTX1 gene_id:5013|Hs108|chr2 (354 aa)
initn: 717 init1: 494 opt: 572 Z-score: 323.2 bits: 68.1 E(32554): 1.1e-11
Smith-Waterman score: 676; 40.7% identity (65.1% similar) in 332 aa overlap (1-293:1-324)
10 20 30 40 50 60
pF1KB7 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAK
::.:.. : :..:.:.:.::..::.: .: ::..::::::::::::::::. :::::::
CCDS18 MMSYLKQPP-YGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAK
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 TQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRK
:.:::.. :::::::::::::::::::::::::::::.:. . .. :. . :. :....
CCDS18 TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQSGSGTKSRPA-KKKSSPVRES
60 70 80 90 100 110
130 140 150 160
pF1KB7 AG-------TSPRPSTDVCPDPLGISDSYSPPLP---GPSGSPTTAVATVS------IWS
.: : : :... . . :.: .: : .:.:..:....: :::
CCDS18 SGSESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWS
120 130 140 150 160 170
170 180 190 200
pF1KB7 PASESP--------LPEA----------QRAGLVASGPSLTSAPYAMTYAPASAFCSSPS
::: :: .:: ::. ::.: . ..: : :.:. .... .
CCDS18 PASISPGSAPASVSVPEPLAAPSNTSCMQRS--VAAGAATAAASYPMSYGQGGSY---GQ
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB7 AYGSPSS-YFSGLD--PYLSPMVPQLGGPALSPLSGPSVGPSLAQSPTSLS--GQSYGAY
.: .::: ::.:.: ::.:: . :::.. :.. . : . .:: : .
CCDS18 GYPTPSSSYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHH
240 250 260 270 280 290
270 280 290
pF1KB7 SPVDSLEFKDPTGTWKFTYNPMDPLDYKDQSAWKFQIL
. . :. ...: : ::::. .:
CCDS18 HHHHHHHHQGYGGS-GLAFNSADCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQASWRFQ
300 310 320 330 340 350
CCDS18 VL
>>CCDS9728.1 OTX2 gene_id:5015|Hs108|chr14 (297 aa)
initn: 646 init1: 410 opt: 564 Z-score: 320.0 bits: 67.2 E(32554): 1.7e-11
Smith-Waterman score: 899; 50.8% identity (70.7% similar) in 317 aa overlap (1-299:1-297)
10 20 30 40 50
pF1KB7 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYP--------SAPRKQRRERTTFTRSQLE
::.:.. : :.::.:.:. ..::.: .: :: ..:::::::::::::.::.
CCDS97 MMSYLKQPP-YAVNGLSLTTSGMDLLHPSVGYPGPWASCPAATPRKQRRERTTFTRAQLD
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 ELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQA
::::::::.:::.. ::::::::::::::::::::::::::::: :::: :::
CCDS97 VLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ-----QQQQQNGGQN
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 KARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATVSIWSPASESPLP
:.::::.: ::: . .: . : : ...:: . ... : :::::::: :::
CCDS97 KVRPAKKK--TSP--AREVSSES-GTSGQFTPPSSTSVPTIASSSAPVSIWSPASISPLS
120 130 140 150 160
180 190 200 210 220 230
pF1KB7 EAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLD--PYLSPMVPQLG
. .... : . : :::. ::.. ..:.. .:::.:.: ::.:: ::
CCDS97 DP-----LSTSSSCMQRSYPMTYTQASGYS---QGYAGSTSYFGGMDCGSYLTPMHHQLP
170 180 190 200 210 220
240 250 260 270 280
pF1KB7 GPA--LSPLSGPSVGPSLAQSPTSLSGQSYGAYS-----PVDSLEFKDPTGTWKFTYNPM
::. :::.. .: : :::.::: :.::: : .: :..:: :..::...:
CCDS97 GPGATLSPMGTNAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLDYKDQTASWKLNFNA-
230 240 250 260 270 280
290
pF1KB7 DPLDYKDQ-SAWKFQIL
: :::::: :.::::.:
CCDS97 DCLDYKDQTSSWKFQVL
290
299 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:53:03 2016 done: Sat Nov 5 07:53:03 2016
Total Scan time: 3.120 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]