FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7595, 233 aa
  1>>>pF1KB7595 233 - 233 aa - 233 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6431+/-0.000719; mu= 12.2097+/- 0.043
 mean_var=64.3053+/-12.643, 0's: 0 Z-trim(109.1): 14  B-trim: 4 in 1/49
 Lambda= 0.159938
 statistics sampled from 10647 (10659) to 10647 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.327), width:  16
 Scan time:  2.430

The best scores are:                                      opt bits E(32554)
CCDS4702.1 TNF gene_id:7124|Hs108|chr6             ( 233) 1531 361.5 2.6e-100
CCDS4701.1 LTA gene_id:4049|Hs108|chr6             ( 205)  305 78.6 3.4e-15


>>CCDS4702.1 TNF gene_id:7124|Hs108|chr6                  (233 aa)
 initn: 1531 init1: 1531 opt: 1531  Z-score: 1914.3  bits: 361.5 E(32554): 2.6e-100
Smith-Waterman score: 1531; 100.0% identity (100.0% similar) in 233 aa overlap (1-233:1-233)

               10        20        30        40        50        60
pF1KB7 MSTESMIRDVELAEEALPKKTGGPQGSRRCLFLSLFSFLIVAGATTLFCLLHFGVIGPQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSTESMIRDVELAEEALPKKTGGPQGSRRCLFLSLFSFLIVAGATTLFCLLHFGVIGPQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EEFPRDLSLISPLAQAVRSSSRTPSDKPVAHVVANPQAEGQLQWLNRRANALLANGVELR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EEFPRDLSLISPLAQAVRSSSRTPSDKPVAHVVANPQAEGQLQWLNRRANALLANGVELR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSYQTKVNLLSAIKSPCQRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSYQTKVNLLSAIKSPCQRE
              130       140       150       160       170       180

              190       200       210       220       230   
pF1KB7 TPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIAL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIAL
              190       200       210       220       230   

>>CCDS4701.1 LTA gene_id:4049|Hs108|chr6                  (205 aa)
 initn: 289 init1: 178 opt: 305  Z-score: 386.4  bits: 78.6 E(32554): 3.4e-15
Smith-Waterman score: 305; 32.4% identity (62.8% similar) in 207 aa overlap (38-233:8-205)

        10        20        30        40        50           60    
pF1KB7 RDVELAEEALPKKTGGPQGSRRCLFLSLFSFLIVAGATTLFCLLHFG---VIGPQREEFP
                                     ::  . .:::  :: .:   :. :  . .:
CCDS47                        MTPPERLFLPRVCGTTLHLLL-LGLLLVLLPGAQGLP
                                      10        20         30      

           70        80            90       100       110       120
pF1KB7 RDLSLISPLAQAVRSSSRT----PSDKPVAHVVANPQAEGQLQWLNRRANALLANGVELR
         ..:    ::..:.  .      . ::.::....:. ...: :      :.: .:  : 
CCDS47 -GVGLTPSAAQTARQHPKMHLAHSTLKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLS
          40        50        60        70        80        90     

              130       140           150       160       170      
pF1KB7 DNQLVVPSEGLYLIYSQVLFKGQG-CP---STHVLLTHTISRIAVSYQTKVNLLSAIKSP
       .:.:.::. :.:..::::.:.:..  :   :. . :.: .. .. .:  .: :::.    
CCDS47 NNSLLVPTSGIYFVYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYPFHVPLLSS----
         100       110       120       130       140       150     

        180       190       200       210       220       230   
pF1KB7 CQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIAL
        :. .  : . .:: . .: :..::: .::.::.. .   .: .. :  :.:: .::
CCDS47 -QKMVYPGLQ-EPWLHSMYHGAAFQLTQGDQLSTHTDGIPHLVLSPS-TVFFGAFAL
              160        170       180       190        200     




233 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:55:12 2016 done: Fri Nov  4 08:55:12 2016
 Total Scan time:  2.430 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]