Result of FASTA (omim) for
pF1KB7573
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7573, 212 aa
1>>>pF1KB7573 212 - 212 aa - 212 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1019+/-0.000351; mu= 14.3230+/- 0.022
mean_var=57.1635+/-11.764, 0's: 0 Z-trim(113.2): 15 B-trim: 11 in 1/57
Lambda= 0.169635
statistics sampled from 22448 (22460) to 22448 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.263), width: 16
Scan time: 5.340
The best scores are: opt bits E(85289)
NP_004266 (OMIM: 612915) mediator of RNA polymeras ( 212) 1425 356.8 1.5e-98
NP_001292385 (OMIM: 612915) mediator of RNA polyme ( 150) 1022 258.1 5.6e-69
NP_001292384 (OMIM: 612915) mediator of RNA polyme ( 150) 1022 258.1 5.6e-69
NP_001292386 (OMIM: 612915) mediator of RNA polyme ( 123) 767 195.6 2.9e-50
>>NP_004266 (OMIM: 612915) mediator of RNA polymerase II (212 aa)
initn: 1425 init1: 1425 opt: 1425 Z-score: 1890.1 bits: 356.8 E(85289): 1.5e-98
Smith-Waterman score: 1425; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KB7 MGVTCVSQMPVAEGKSVQQTVELLTRKLEMLGAEKQGTFCVDCETYHTAASTLGSQGQTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MGVTCVSQMPVAEGKSVQQTVELLTRKLEMLGAEKQGTFCVDCETYHTAASTLGSQGQTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KLMYVMHNSEYPLSCFALFENGPCLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KLMYVMHNSEYPLSCFALFENGPCLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 DFLVKVGTVTMGPSARGISVEVEYGPCVVASDCWSLLLEFLQSFLGSHTPGAPAVFGNRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DFLVKVGTVTMGPSARGISVEVEYGPCVVASDCWSLLLEFLQSFLGSHTPGAPAVFGNRH
130 140 150 160 170 180
190 200 210
pF1KB7 DAVYGPADTMVQYMELFNKIRKQQQVPVAGIR
::::::::::::::::::::::::::::::::
NP_004 DAVYGPADTMVQYMELFNKIRKQQQVPVAGIR
190 200 210
>>NP_001292385 (OMIM: 612915) mediator of RNA polymerase (150 aa)
initn: 1022 init1: 1022 opt: 1022 Z-score: 1359.4 bits: 258.1 E(85289): 5.6e-69
Smith-Waterman score: 1022; 100.0% identity (100.0% similar) in 150 aa overlap (63-212:1-150)
40 50 60 70 80 90
pF1KB7 AEKQGTFCVDCETYHTAASTLGSQGQTGKLMYVMHNSEYPLSCFALFENGPCLIADTNFD
::::::::::::::::::::::::::::::
NP_001 MYVMHNSEYPLSCFALFENGPCLIADTNFD
10 20 30
100 110 120 130 140 150
pF1KB7 VLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEVEYGPCVVASD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEVEYGPCVVASD
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB7 CWSLLLEFLQSFLGSHTPGAPAVFGNRHDAVYGPADTMVQYMELFNKIRKQQQVPVAGIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CWSLLLEFLQSFLGSHTPGAPAVFGNRHDAVYGPADTMVQYMELFNKIRKQQQVPVAGIR
100 110 120 130 140 150
>>NP_001292384 (OMIM: 612915) mediator of RNA polymerase (150 aa)
initn: 1022 init1: 1022 opt: 1022 Z-score: 1359.4 bits: 258.1 E(85289): 5.6e-69
Smith-Waterman score: 1022; 100.0% identity (100.0% similar) in 150 aa overlap (63-212:1-150)
40 50 60 70 80 90
pF1KB7 AEKQGTFCVDCETYHTAASTLGSQGQTGKLMYVMHNSEYPLSCFALFENGPCLIADTNFD
::::::::::::::::::::::::::::::
NP_001 MYVMHNSEYPLSCFALFENGPCLIADTNFD
10 20 30
100 110 120 130 140 150
pF1KB7 VLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEVEYGPCVVASD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEVEYGPCVVASD
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB7 CWSLLLEFLQSFLGSHTPGAPAVFGNRHDAVYGPADTMVQYMELFNKIRKQQQVPVAGIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CWSLLLEFLQSFLGSHTPGAPAVFGNRHDAVYGPADTMVQYMELFNKIRKQQQVPVAGIR
100 110 120 130 140 150
>>NP_001292386 (OMIM: 612915) mediator of RNA polymerase (123 aa)
initn: 767 init1: 767 opt: 767 Z-score: 1023.4 bits: 195.6 E(85289): 2.9e-50
Smith-Waterman score: 767; 99.1% identity (100.0% similar) in 117 aa overlap (1-117:1-117)
10 20 30 40 50 60
pF1KB7 MGVTCVSQMPVAEGKSVQQTVELLTRKLEMLGAEKQGTFCVDCETYHTAASTLGSQGQTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGVTCVSQMPVAEGKSVQQTVELLTRKLEMLGAEKQGTFCVDCETYHTAASTLGSQGQTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KLMYVMHNSEYPLSCFALFENGPCLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 KLMYVMHNSEYPLSCFALFENGPCLIADTNFDVLMVKLKGFFQSAKASKIETRGTRWSMA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 DFLVKVGTVTMGPSARGISVEVEYGPCVVASDCWSLLLEFLQSFLGSHTPGAPAVFGNRH
NP_001 PVW
212 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:48:50 2016 done: Fri Nov 4 08:48:51 2016
Total Scan time: 5.340 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]