FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7573, 212 aa
  1>>>pF1KB7573 212 - 212 aa - 212 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1471+/-0.000775; mu= 14.1627+/- 0.047
 mean_var=55.6232+/-11.399, 0's: 0 Z-trim(106.6): 9  B-trim: 8 in 1/47
 Lambda= 0.171967
 statistics sampled from 9046 (9051) to 9046 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.278), width:  16
 Scan time:  1.780

The best scores are:                                      opt bits E(32554)
CCDS4862.1 MED20 gene_id:9477|Hs108|chr6           ( 212) 1425 361.3 2.5e-100
CCDS83085.1 MED20 gene_id:9477|Hs108|chr6          ( 123)  767 198.0 2.1e-51


>>CCDS4862.1 MED20 gene_id:9477|Hs108|chr6                (212 aa)
 initn: 1425 init1: 1425 opt: 1425  Z-score: 1914.7  bits: 361.3 E(32554): 2.5e-100
Smith-Waterman score: 1425; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KB7 MGVTCVSQMPVAEGKSVQQTVELLTRKLEMLGAEKQGTFCVDCETYHTAASTLGSQGQTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MGVTCVSQMPVAEGKSVQQTVELLTRKLEMLGAEKQGTFCVDCETYHTAASTLGSQGQTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KLMYVMHNSEYPLSCFALFENGPCLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KLMYVMHNSEYPLSCFALFENGPCLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DFLVKVGTVTMGPSARGISVEVEYGPCVVASDCWSLLLEFLQSFLGSHTPGAPAVFGNRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DFLVKVGTVTMGPSARGISVEVEYGPCVVASDCWSLLLEFLQSFLGSHTPGAPAVFGNRH
              130       140       150       160       170       180

              190       200       210  
pF1KB7 DAVYGPADTMVQYMELFNKIRKQQQVPVAGIR
       ::::::::::::::::::::::::::::::::
CCDS48 DAVYGPADTMVQYMELFNKIRKQQQVPVAGIR
              190       200       210  

>>CCDS83085.1 MED20 gene_id:9477|Hs108|chr6               (123 aa)
 initn: 767 init1: 767 opt: 767  Z-score: 1036.2  bits: 198.0 E(32554): 2.1e-51
Smith-Waterman score: 767; 99.1% identity (100.0% similar) in 117 aa overlap (1-117:1-117)

               10        20        30        40        50        60
pF1KB7 MGVTCVSQMPVAEGKSVQQTVELLTRKLEMLGAEKQGTFCVDCETYHTAASTLGSQGQTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MGVTCVSQMPVAEGKSVQQTVELLTRKLEMLGAEKQGTFCVDCETYHTAASTLGSQGQTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KLMYVMHNSEYPLSCFALFENGPCLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.   
CCDS83 KLMYVMHNSEYPLSCFALFENGPCLIADTNFDVLMVKLKGFFQSAKASKIETRGTRWSMA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DFLVKVGTVTMGPSARGISVEVEYGPCVVASDCWSLLLEFLQSFLGSHTPGAPAVFGNRH
                                                                   
CCDS83 PVW                                                         
                                                                   




212 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:48:50 2016 done: Fri Nov  4 08:48:50 2016
 Total Scan time:  1.780 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]