FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7559, 206 aa
  1>>>pF1KB7559 206 - 206 aa - 206 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2969+/-0.000721; mu= 6.6758+/- 0.044
 mean_var=160.1359+/-31.724, 0's: 0 Z-trim(115.9): 45  B-trim: 0 in 0/50
 Lambda= 0.101351
 statistics sampled from 16383 (16428) to 16383 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.505), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS43746.1 MSC gene_id:9242|Hs108|chr8            ( 206) 1380 212.3 1.7e-55
CCDS5167.1 TCF21 gene_id:6943|Hs108|chr6           ( 179)  635 103.3 9.4e-23


>>CCDS43746.1 MSC gene_id:9242|Hs108|chr8                 (206 aa)
 initn: 1380 init1: 1380 opt: 1380  Z-score: 1109.9  bits: 212.3 E(32554): 1.7e-55
Smith-Waterman score: 1380; 100.0% identity (100.0% similar) in 206 aa overlap (1-206:1-206)

               10        20        30        40        50        60
pF1KB7 MSTGSVSDPEEMELRGLQREYPVPASKRPPLRGVERSYASPSDNSSAEEEDPDGEEERCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MSTGSVSDPEEMELRGLQREYPVPASKRPPLRGVERSYASPSDNSSAEEEDPDGEEERCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGTAGSAEGCKRKRPRVAGGGGAGGSAGGGGKKPLPAKGSAAECKQSQRNAANARERARM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LGTAGSAEGCKRKRPRVAGGGGAGGSAGGGGKKPLPAKGSAAECKQSQRNAANARERARM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENGYVHPVNLTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENGYVHPVNLTW
              130       140       150       160       170       180

              190       200      
pF1KB7 PFVVSGRPDSDTKEVSAANRLCGTTA
       ::::::::::::::::::::::::::
CCDS43 PFVVSGRPDSDTKEVSAANRLCGTTA
              190       200      

>>CCDS5167.1 TCF21 gene_id:6943|Hs108|chr6                (179 aa)
 initn: 654 init1: 614 opt: 635  Z-score: 521.9  bits: 103.3 E(32554): 9.4e-23
Smith-Waterman score: 635; 71.5% identity (83.2% similar) in 137 aa overlap (70-206:44-178)

      40        50        60        70        80        90         
pF1KB7 SPSDNSSAEEEDPDGEEERCALGTAGSAEGCKRKRPRVAGGGGAGGSAGGGGKKPLPAKG
                                     :.   :.  : :: :    .  ::  : .:
CCDS51 EVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQ-KGRGGLGKRRKAPTKKS-PLSG
            20        30        40        50         60         70 

     100       110       120       130       140       150         
pF1KB7 SAAECKQSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHL
        . : :: :::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS51 VSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHL
              80        90       100       110       120       130 

     160       170       180       190       200       
pF1KB7 RQLLQEDRYENGYVHPVNLTWPFVVSGRPDSDTKEVSAANRLCGTTA 
       ::.: .:.:::::.:::::::::.:.:.:.:: ::: .:.::::::: 
CCDS51 RQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS
             140       150       160       170         




206 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:41:57 2016 done: Fri Nov  4 08:41:58 2016
 Total Scan time:  2.180 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]