FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7557, 202 aa
  1>>>pF1KB7557 202 - 202 aa - 202 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9789+/-0.000255; mu= 6.6071+/- 0.016
 mean_var=106.6781+/-21.721, 0's: 0 Z-trim(122.7): 4  B-trim: 0 in 0/58
 Lambda= 0.124176
 statistics sampled from 41106 (41127) to 41106 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.482), width:  16
 Scan time:  6.470

The best scores are:                                      opt bits E(85289)
NP_001269312 (OMIM: 604147) securin [Homo sapiens] ( 202) 1343 250.0   2e-66
NP_004210 (OMIM: 604147) securin [Homo sapiens]    ( 202) 1343 250.0   2e-66
NP_001269311 (OMIM: 604147) securin [Homo sapiens] ( 202) 1343 250.0   2e-66
NP_006598 (OMIM: 604231) securin-2 [Homo sapiens]  ( 191) 1026 193.2 2.3e-49


>>NP_001269312 (OMIM: 604147) securin [Homo sapiens]      (202 aa)
 initn: 1343 init1: 1343 opt: 1343  Z-score: 1313.7  bits: 250.0 E(85289): 2e-66
Smith-Waterman score: 1343; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KB7 MATLIYVDKENGEPGTRVVAKDGLKLGSGPSIKALDGRSQVSTPRFGKTFDAPPALPKAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATLIYVDKENGEPGTRVVAKDGLKLGSGPSIKALDGRSQVSTPRFGKTFDAPPALPKAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RKALGTVNRATEKSVKTKGPLKQKQPSFSAKKMTEKTVKAKSSVPASDDAYPEIEKFFPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKALGTVNRATEKSVKTKGPLKQKQPSFSAKKMTEKTVKAKSSVPASDDAYPEIEKFFPF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NPLDFESFDLPEEHQIAHLPLSGVPLMILDEERELEKLFQLGPPSPVKMPSPPWESNLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPLDFESFDLPEEHQIAHLPLSGVPLMILDEERELEKLFQLGPPSPVKMPSPPWESNLLQ
              130       140       150       160       170       180

              190       200  
pF1KB7 SPSSILSTLDVELPPVCCDIDI
       ::::::::::::::::::::::
NP_001 SPSSILSTLDVELPPVCCDIDI
              190       200  

>>NP_004210 (OMIM: 604147) securin [Homo sapiens]         (202 aa)
 initn: 1343 init1: 1343 opt: 1343  Z-score: 1313.7  bits: 250.0 E(85289): 2e-66
Smith-Waterman score: 1343; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KB7 MATLIYVDKENGEPGTRVVAKDGLKLGSGPSIKALDGRSQVSTPRFGKTFDAPPALPKAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MATLIYVDKENGEPGTRVVAKDGLKLGSGPSIKALDGRSQVSTPRFGKTFDAPPALPKAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RKALGTVNRATEKSVKTKGPLKQKQPSFSAKKMTEKTVKAKSSVPASDDAYPEIEKFFPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RKALGTVNRATEKSVKTKGPLKQKQPSFSAKKMTEKTVKAKSSVPASDDAYPEIEKFFPF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NPLDFESFDLPEEHQIAHLPLSGVPLMILDEERELEKLFQLGPPSPVKMPSPPWESNLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NPLDFESFDLPEEHQIAHLPLSGVPLMILDEERELEKLFQLGPPSPVKMPSPPWESNLLQ
              130       140       150       160       170       180

              190       200  
pF1KB7 SPSSILSTLDVELPPVCCDIDI
       ::::::::::::::::::::::
NP_004 SPSSILSTLDVELPPVCCDIDI
              190       200  

>>NP_001269311 (OMIM: 604147) securin [Homo sapiens]      (202 aa)
 initn: 1343 init1: 1343 opt: 1343  Z-score: 1313.7  bits: 250.0 E(85289): 2e-66
Smith-Waterman score: 1343; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KB7 MATLIYVDKENGEPGTRVVAKDGLKLGSGPSIKALDGRSQVSTPRFGKTFDAPPALPKAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATLIYVDKENGEPGTRVVAKDGLKLGSGPSIKALDGRSQVSTPRFGKTFDAPPALPKAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RKALGTVNRATEKSVKTKGPLKQKQPSFSAKKMTEKTVKAKSSVPASDDAYPEIEKFFPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKALGTVNRATEKSVKTKGPLKQKQPSFSAKKMTEKTVKAKSSVPASDDAYPEIEKFFPF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NPLDFESFDLPEEHQIAHLPLSGVPLMILDEERELEKLFQLGPPSPVKMPSPPWESNLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPLDFESFDLPEEHQIAHLPLSGVPLMILDEERELEKLFQLGPPSPVKMPSPPWESNLLQ
              130       140       150       160       170       180

              190       200  
pF1KB7 SPSSILSTLDVELPPVCCDIDI
       ::::::::::::::::::::::
NP_001 SPSSILSTLDVELPPVCCDIDI
              190       200  

>>NP_006598 (OMIM: 604231) securin-2 [Homo sapiens]       (191 aa)
 initn: 1076 init1: 1026 opt: 1026  Z-score: 1007.2  bits: 193.2 E(85289): 2.3e-49
Smith-Waterman score: 1026; 89.9% identity (93.3% similar) in 179 aa overlap (1-179:1-179)

               10        20        30        40        50        60
pF1KB7 MATLIYVDKENGEPGTRVVAKDGLKLGSGPSIKALDGRSQVSTPRFGKTFDAPPALPKAT
       :::::::::: :::::::.::: ::: : :::::::: ::: : :::::.::: ::::::
NP_006 MATLIYVDKEIGEPGTRVAAKDVLKLESRPSIKALDGISQVLTRRFGKTYDAPSALPKAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RKALGTVNRATEKSVKTKGPLKQKQPSFSAKKMTEKTVKAKSSVPASDDAYPEIEKFFPF
       :::::::::::::::::.:: ::::::::::::::::::.::::::::::::::::::::
NP_006 RKALGTVNRATEKSVKTNGPRKQKQPSFSAKKMTEKTVKTKSSVPASDDAYPEIEKFFPF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NPLDFESFDLPEEHQIAHLPLSGVPLMILDEERELEKLFQLGPPSPVKMPSPPWESNLLQ
       : :::::::::::.:::::::::::::::::: :::::::::::::::::::::: ::. 
NP_006 NLLDFESFDLPEERQIAHLPLSGVPLMILDEEGELEKLFQLGPPSPVKMPSPPWECNLFA
              130       140       150       160       170       180

              190       200  
pF1KB7 SPSSILSTLDVELPPVCCDIDI
                             
NP_006 VSFKHSVDPGC           
              190            




202 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:41:28 2016 done: Fri Nov  4 08:41:28 2016
 Total Scan time:  6.470 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]