FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7557, 202 aa
  1>>>pF1KB7557 202 - 202 aa - 202 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7539+/-0.000593; mu= 7.7914+/- 0.036
 mean_var=100.8421+/-20.273, 0's: 0 Z-trim(115.0): 6  B-trim: 0 in 0/54
 Lambda= 0.127718
 statistics sampled from 15557 (15560) to 15557 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.478), width:  16
 Scan time:  2.440

The best scores are:                                      opt bits E(32554)
CCDS4353.1 PTTG1 gene_id:9232|Hs108|chr5           ( 202) 1343 256.6 7.4e-69
CCDS54755.1 PTTG2 gene_id:10744|Hs108|chr4         ( 191) 1026 198.2 2.7e-51


>>CCDS4353.1 PTTG1 gene_id:9232|Hs108|chr5                (202 aa)
 initn: 1343 init1: 1343 opt: 1343  Z-score: 1349.7  bits: 256.6 E(32554): 7.4e-69
Smith-Waterman score: 1343; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KB7 MATLIYVDKENGEPGTRVVAKDGLKLGSGPSIKALDGRSQVSTPRFGKTFDAPPALPKAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MATLIYVDKENGEPGTRVVAKDGLKLGSGPSIKALDGRSQVSTPRFGKTFDAPPALPKAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RKALGTVNRATEKSVKTKGPLKQKQPSFSAKKMTEKTVKAKSSVPASDDAYPEIEKFFPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RKALGTVNRATEKSVKTKGPLKQKQPSFSAKKMTEKTVKAKSSVPASDDAYPEIEKFFPF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NPLDFESFDLPEEHQIAHLPLSGVPLMILDEERELEKLFQLGPPSPVKMPSPPWESNLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NPLDFESFDLPEEHQIAHLPLSGVPLMILDEERELEKLFQLGPPSPVKMPSPPWESNLLQ
              130       140       150       160       170       180

              190       200  
pF1KB7 SPSSILSTLDVELPPVCCDIDI
       ::::::::::::::::::::::
CCDS43 SPSSILSTLDVELPPVCCDIDI
              190       200  

>>CCDS54755.1 PTTG2 gene_id:10744|Hs108|chr4              (191 aa)
 initn: 1076 init1: 1026 opt: 1026  Z-score: 1034.4  bits: 198.2 E(32554): 2.7e-51
Smith-Waterman score: 1026; 89.9% identity (93.3% similar) in 179 aa overlap (1-179:1-179)

               10        20        30        40        50        60
pF1KB7 MATLIYVDKENGEPGTRVVAKDGLKLGSGPSIKALDGRSQVSTPRFGKTFDAPPALPKAT
       :::::::::: :::::::.::: ::: : :::::::: ::: : :::::.::: ::::::
CCDS54 MATLIYVDKEIGEPGTRVAAKDVLKLESRPSIKALDGISQVLTRRFGKTYDAPSALPKAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RKALGTVNRATEKSVKTKGPLKQKQPSFSAKKMTEKTVKAKSSVPASDDAYPEIEKFFPF
       :::::::::::::::::.:: ::::::::::::::::::.::::::::::::::::::::
CCDS54 RKALGTVNRATEKSVKTNGPRKQKQPSFSAKKMTEKTVKTKSSVPASDDAYPEIEKFFPF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NPLDFESFDLPEEHQIAHLPLSGVPLMILDEERELEKLFQLGPPSPVKMPSPPWESNLLQ
       : :::::::::::.:::::::::::::::::: :::::::::::::::::::::: ::. 
CCDS54 NLLDFESFDLPEERQIAHLPLSGVPLMILDEEGELEKLFQLGPPSPVKMPSPPWECNLFA
              130       140       150       160       170       180

              190       200  
pF1KB7 SPSSILSTLDVELPPVCCDIDI
                             
CCDS54 VSFKHSVDPGC           
              190            




202 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:41:27 2016 done: Fri Nov  4 08:41:27 2016
 Total Scan time:  2.440 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]