FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7549, 193 aa
  1>>>pF1KB7549 193 - 193 aa - 193 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1435+/-0.000909; mu= 13.0315+/- 0.054
 mean_var=51.3884+/-10.285, 0's: 0 Z-trim(103.4): 23  B-trim: 0 in 0/50
 Lambda= 0.178913
 statistics sampled from 7395 (7399) to 7395 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.227), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS10793.1 CFAP20 gene_id:29105|Hs108|chr16       ( 193) 1281 338.5 1.6e-93


>>CCDS10793.1 CFAP20 gene_id:29105|Hs108|chr16            (193 aa)
 initn: 1281 init1: 1281 opt: 1281  Z-score: 1792.6  bits: 338.5 E(32554): 1.6e-93
Smith-Waterman score: 1281; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KB7 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 MPMRLDDGWNQIQFNLLDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPMRLDDGWNQIQFNLLDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE
              130       140       150       160       170       180

              190   
pF1KB7 FKLYLPVQNKAKQ
       :::::::::::::
CCDS10 FKLYLPVQNKAKQ
              190   




193 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:37:53 2016 done: Fri Nov  4 08:37:54 2016
 Total Scan time:  1.760 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]