FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7541, 178 aa
  1>>>pF1KB7541 178 - 178 aa - 178 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2458+/-0.000572; mu= 14.8697+/- 0.035
 mean_var=74.5870+/-14.686, 0's: 0 Z-trim(113.7): 3  B-trim: 0 in 0/51
 Lambda= 0.148506
 statistics sampled from 14308 (14311) to 14308 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.44), width:  16
 Scan time:  1.790

The best scores are:                                      opt bits E(32554)
CCDS6323.1 MED30 gene_id:90390|Hs108|chr8          ( 178) 1191 263.1 6.4e-71
CCDS64959.1 MED30 gene_id:90390|Hs108|chr8         ( 143)  762 171.1 2.5e-43


>>CCDS6323.1 MED30 gene_id:90390|Hs108|chr8               (178 aa)
 initn: 1191 init1: 1191 opt: 1191  Z-score: 1386.8  bits: 263.1 E(32554): 6.4e-71
Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 178 aa overlap (1-178:1-178)

               10        20        30        40        50        60
pF1KB7 MSTPPLAASGMAPGPFAGPQAQQAAREVNTASLCRIGQETVQDIVYRTMEIFQLLRNMQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MSTPPLAASGMAPGPFAGPQAQQAAREVNTASLCRIGQETVQDIVYRTMEIFQLLRNMQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PNGVTYHTGTYQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENCGGMDPIPVEQLIPYVEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PNGVTYHTGTYQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENCGGMDPIPVEQLIPYVEE
               70        80        90       100       110       120

              130       140       150       160       170        
pF1KB7 DGSKNDDRAGPPRFASEERREIAEVNKKLKQKNQQLKQIMDQLRNLIWDINAMLAMRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DGSKNDDRAGPPRFASEERREIAEVNKKLKQKNQQLKQIMDQLRNLIWDINAMLAMRN
              130       140       150       160       170        

>>CCDS64959.1 MED30 gene_id:90390|Hs108|chr8              (143 aa)
 initn: 794 init1: 762 opt: 762  Z-score: 891.4  bits: 171.1 E(32554): 2.5e-43
Smith-Waterman score: 878; 80.3% identity (80.3% similar) in 178 aa overlap (1-178:1-143)

               10        20        30        40        50        60
pF1KB7 MSTPPLAASGMAPGPFAGPQAQQAAREVNTASLCRIGQETVQDIVYRTMEIFQLLRNMQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MSTPPLAASGMAPGPFAGPQAQQAAREVNTASLCRIGQETVQDIVYRTMEIFQLLRNMQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PNGVTYHTGTYQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENCGGMDPIPVEQLIPYVEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
CCDS64 PNGVTYHTGTYQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENCGGMDPIPVE--------
               70        80        90       100       110          

              130       140       150       160       170        
pF1KB7 DGSKNDDRAGPPRFASEERREIAEVNKKLKQKNQQLKQIMDQLRNLIWDINAMLAMRN
                                  :::::::::::::::::::::::::::::::
CCDS64 ---------------------------KLKQKNQQLKQIMDQLRNLIWDINAMLAMRN
                                       120       130       140   




178 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:33:45 2016 done: Fri Nov  4 08:33:46 2016
 Total Scan time:  1.790 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]