FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7526, 251 aa
  1>>>pF1KB7526 251 - 251 aa - 251 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2828+/-0.000346; mu= 0.8008+/- 0.022
 mean_var=162.4367+/-33.525, 0's: 0 Z-trim(119.6): 7  B-trim: 440 in 1/56
 Lambda= 0.100631
 statistics sampled from 33830 (33839) to 33830 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.397), width:  16
 Scan time:  7.280

The best scores are:                                      opt bits E(85289)
NP_057059 (OMIM: 300754) transcription initiation  ( 251) 1658 252.1 7.1e-67
NP_001015892 (OMIM: 600822) transcription initiati ( 264) 1317 202.6   6e-52
NP_003178 (OMIM: 600822) transcription initiation  ( 264) 1317 202.6   6e-52


>>NP_057059 (OMIM: 300754) transcription initiation fact  (251 aa)
 initn: 1658 init1: 1658 opt: 1658  Z-score: 1321.6  bits: 252.1 E(85289): 7.1e-67
Smith-Waterman score: 1658; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)

               10        20        30        40        50        60
pF1KB7 MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 AKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 CLTAPNYRLKSLIKKGPNQGRLVPRLSVGAVSSKPTTPTIATPQTVSVPNKVATPMSVTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 CLTAPNYRLKSLIKKGPNQGRLVPRLSVGAVSSKPTTPTIATPQTVSVPNKVATPMSVTS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QRFTVQIPPSQSTPVKPVPATTAVQNVLINPSMIGPKNILITTNMVSSQNTANEANPLKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 QRFTVQIPPSQSTPVKPVPATTAVQNVLINPSMIGPKNILITTNMVSSQNTANEANPLKR
              190       200       210       220       230       240

              250 
pF1KB7 KHEDDDDNDIM
       :::::::::::
NP_057 KHEDDDDNDIM
              250 

>>NP_001015892 (OMIM: 600822) transcription initiation f  (264 aa)
 initn: 1492 init1: 831 opt: 1317  Z-score: 1053.7  bits: 202.6 E(85289): 6e-52
Smith-Waterman score: 1317; 80.8% identity (92.2% similar) in 255 aa overlap (1-249:1-255)

               10        20        30        40        50        60
pF1KB7 MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
       ::::: : ::. :.:: .::::::::::::::::::::::::::::::::::::::::::
NP_001 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRY
       ::: .:::::::::::::::::::::::::::::::::.:::::::::::.:::::::::
NP_001 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY
               70        80        90       100       110       120

              130        140        150       160         170      
pF1KB7 CLTAPNYRLKSLIKKGPNQ-GRL-VPRLSVGAVSSKPTTPTIATP--QTVSVPNKVATPM
       :::::::::::: ::. .. ::. :::::::.:.:.:.:::..::  ::.:: .::.:::
NP_001 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM
              130       140       150       160       170       180

        180       190        200       210       220       230     
pF1KB7 SVTSQRFTVQIPPSQSTPVKP-VPATTAVQNVLINPSMIGPKNILITTNMVSSQNTANEA
       :.:.::::::.: :::  ::  .:::.::::::::::.:: :::::::::.::::::::.
NP_001 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES
              190       200       210       220       230       240

          240       250        
pF1KB7 -NPLKRKHEDDDDNDIM       
        : ::::.:::::.:         
NP_001 SNALKRKREDDDDDDDDDDDYDNL
              250       260    

>>NP_003178 (OMIM: 600822) transcription initiation fact  (264 aa)
 initn: 1492 init1: 831 opt: 1317  Z-score: 1053.7  bits: 202.6 E(85289): 6e-52
Smith-Waterman score: 1317; 80.8% identity (92.2% similar) in 255 aa overlap (1-249:1-255)

               10        20        30        40        50        60
pF1KB7 MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
       ::::: : ::. :.:: .::::::::::::::::::::::::::::::::::::::::::
NP_003 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRY
       ::: .:::::::::::::::::::::::::::::::::.:::::::::::.:::::::::
NP_003 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY
               70        80        90       100       110       120

              130        140        150       160         170      
pF1KB7 CLTAPNYRLKSLIKKGPNQ-GRL-VPRLSVGAVSSKPTTPTIATP--QTVSVPNKVATPM
       :::::::::::: ::. .. ::. :::::::.:.:.:.:::..::  ::.:: .::.:::
NP_003 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM
              130       140       150       160       170       180

        180       190        200       210       220       230     
pF1KB7 SVTSQRFTVQIPPSQSTPVKP-VPATTAVQNVLINPSMIGPKNILITTNMVSSQNTANEA
       :.:.::::::.: :::  ::  .:::.::::::::::.:: :::::::::.::::::::.
NP_003 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES
              190       200       210       220       230       240

          240       250        
pF1KB7 -NPLKRKHEDDDDNDIM       
        : ::::.:::::.:         
NP_003 SNALKRKREDDDDDDDDDDDYDNL
              250       260    




251 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:56:04 2016 done: Sat Nov  5 07:56:05 2016
 Total Scan time:  7.280 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]