FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7526, 251 aa
  1>>>pF1KB7526 251 - 251 aa - 251 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8162+/-0.000846; mu= 3.3813+/- 0.051
 mean_var=146.6460+/-29.741, 0's: 0 Z-trim(111.9): 7  B-trim: 154 in 1/53
 Lambda= 0.105911
 statistics sampled from 12707 (12712) to 12707 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.39), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS35340.1 TAF9B gene_id:51616|Hs108|chrX         ( 251) 1658 264.4 5.4e-71
CCDS4002.1 TAF9 gene_id:6880|Hs108|chr5            ( 264) 1317 212.3 2.7e-55


>>CCDS35340.1 TAF9B gene_id:51616|Hs108|chrX              (251 aa)
 initn: 1658 init1: 1658 opt: 1658  Z-score: 1388.0  bits: 264.4 E(32554): 5.4e-71
Smith-Waterman score: 1658; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)

               10        20        30        40        50        60
pF1KB7 MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 CLTAPNYRLKSLIKKGPNQGRLVPRLSVGAVSSKPTTPTIATPQTVSVPNKVATPMSVTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 CLTAPNYRLKSLIKKGPNQGRLVPRLSVGAVSSKPTTPTIATPQTVSVPNKVATPMSVTS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QRFTVQIPPSQSTPVKPVPATTAVQNVLINPSMIGPKNILITTNMVSSQNTANEANPLKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QRFTVQIPPSQSTPVKPVPATTAVQNVLINPSMIGPKNILITTNMVSSQNTANEANPLKR
              190       200       210       220       230       240

              250 
pF1KB7 KHEDDDDNDIM
       :::::::::::
CCDS35 KHEDDDDNDIM
              250 

>>CCDS4002.1 TAF9 gene_id:6880|Hs108|chr5                 (264 aa)
 initn: 1492 init1: 831 opt: 1317  Z-score: 1106.1  bits: 212.3 E(32554): 2.7e-55
Smith-Waterman score: 1317; 80.8% identity (92.2% similar) in 255 aa overlap (1-249:1-255)

               10        20        30        40        50        60
pF1KB7 MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
       ::::: : ::. :.:: .::::::::::::::::::::::::::::::::::::::::::
CCDS40 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRY
       ::: .:::::::::::::::::::::::::::::::::.:::::::::::.:::::::::
CCDS40 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY
               70        80        90       100       110       120

              130        140        150       160         170      
pF1KB7 CLTAPNYRLKSLIKKGPNQ-GRL-VPRLSVGAVSSKPTTPTIATP--QTVSVPNKVATPM
       :::::::::::: ::. .. ::. :::::::.:.:.:.:::..::  ::.:: .::.:::
CCDS40 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM
              130       140       150       160       170       180

        180       190        200       210       220       230     
pF1KB7 SVTSQRFTVQIPPSQSTPVKP-VPATTAVQNVLINPSMIGPKNILITTNMVSSQNTANEA
       :.:.::::::.: :::  ::  .:::.::::::::::.:: :::::::::.::::::::.
CCDS40 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES
              190       200       210       220       230       240

          240       250        
pF1KB7 -NPLKRKHEDDDDNDIM       
        : ::::.:::::.:         
CCDS40 SNALKRKREDDDDDDDDDDDYDNL
              250       260    




251 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:56:03 2016 done: Sat Nov  5 07:56:04 2016
 Total Scan time:  2.460 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]