FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7516, 246 aa
  1>>>pF1KB7516 246 - 246 aa - 246 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8617+/-0.000835; mu= 8.4551+/- 0.050
 mean_var=130.4602+/-26.460, 0's: 0 Z-trim(110.4): 39  B-trim: 73 in 1/52
 Lambda= 0.112288
 statistics sampled from 11579 (11610) to 11579 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.357), width:  16
 Scan time:  2.420

The best scores are:                                      opt bits E(32554)
CCDS7253.1 TFAM gene_id:7019|Hs108|chr10           ( 246) 1643 276.9 8.8e-75
CCDS59217.1 TFAM gene_id:7019|Hs108|chr10          ( 214)  992 171.4 4.4e-43


>>CCDS7253.1 TFAM gene_id:7019|Hs108|chr10                (246 aa)
 initn: 1643 init1: 1643 opt: 1643  Z-score: 1456.0  bits: 276.9 E(32554): 8.8e-75
Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)

               10        20        30        40        50        60
pF1KB7 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK
              190       200       210       220       230       240

             
pF1KB7 YGAEEC
       ::::::
CCDS72 YGAEEC
             

>>CCDS59217.1 TFAM gene_id:7019|Hs108|chr10               (214 aa)
 initn: 992 init1: 992 opt: 992  Z-score: 886.9  bits: 171.4 E(32554): 4.4e-43
Smith-Waterman score: 1358; 87.0% identity (87.0% similar) in 246 aa overlap (1-246:1-214)

               10        20        30        40        50        60
pF1KB7 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQE
       ::::::::::::::::::::::::::::                                
CCDS59 LTPSQIMSLEKEIMDKHLKRKAMTKKKE--------------------------------
              130       140                                        

              190       200       210       220       230       240
pF1KB7 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK
      150       160       170       180       190       200        

             
pF1KB7 YGAEEC
       ::::::
CCDS59 YGAEEC
      210    




246 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:22:30 2016 done: Fri Nov  4 08:22:31 2016
 Total Scan time:  2.420 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]