Result of FASTA (omim) for
pF1KB7506
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7506, 240 aa
1>>>pF1KB7506 240 - 240 aa - 240 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.8019+/-0.000302; mu= 5.3908+/- 0.019
mean_var=212.9903+/-44.017, 0's: 0 Z-trim(123.8): 250 B-trim: 380 in 2/57
Lambda= 0.087881
statistics sampled from 43988 (44304) to 43988 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.519), width: 16
Scan time: 8.040
The best scores are: opt bits E(85289)
NP_612138 (OMIM: 601911,616788) homeobox protein D ( 240) 1665 222.6 4.9e-58
NP_001925 (OMIM: 601911,616788) homeobox protein D ( 168) 1017 140.3 2.1e-33
XP_016879780 (OMIM: 601911,616788) PREDICTED: home ( 168) 1017 140.3 2.1e-33
NP_005213 (OMIM: 600030) homeobox protein DLX-6 [H ( 293) 537 79.7 6.3e-15
NP_835221 (OMIM: 600029) homeobox protein DLX-1 is ( 255) 534 79.2 7.4e-15
NP_004396 (OMIM: 126255) homeobox protein DLX-2 [H ( 328) 426 65.6 1.2e-10
NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287) 406 63.0 6.2e-10
NP_005212 (OMIM: 220600,600028) homeobox protein D ( 289) 382 60.0 5.1e-09
XP_016867292 (OMIM: 220600,600028) PREDICTED: home ( 161) 358 56.7 2.8e-08
XP_005250242 (OMIM: 220600,600028) PREDICTED: home ( 161) 358 56.7 2.8e-08
NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303) 289 48.2 1.9e-05
NP_067545 (OMIM: 603260) homeobox protein BarH-lik ( 254) 282 47.3 3.1e-05
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 274 46.3 6.4e-05
NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 273 46.1 7e-05
XP_011541345 (OMIM: 604823) PREDICTED: homeobox pr ( 233) 271 45.8 7.6e-05
NP_003649 (OMIM: 604823) homeobox protein BarH-lik ( 279) 272 46.0 7.9e-05
NP_004378 (OMIM: 108900,187500,217095,225250,60058 ( 324) 271 46.0 9.5e-05
NP_001091639 (OMIM: 611074) brain-specific homeobo ( 233) 264 44.9 0.00014
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 265 45.4 0.0002
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 265 45.4 0.0002
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 265 45.4 0.0002
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 265 45.4 0.0002
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 265 45.4 0.0002
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 265 45.4 0.0002
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 265 45.4 0.0002
NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 ( 234) 259 44.3 0.00022
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313) 249 43.2 0.00064
NP_057254 (OMIM: 604240) T-cell leukemia homeobox ( 284) 246 42.8 0.00078
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 247 43.0 0.00091
NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 244 42.5 0.00097
NP_001243268 (OMIM: 602041) homeobox protein Nkx-3 ( 159) 238 41.5 0.0011
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 243 42.5 0.0012
NP_001418 (OMIM: 131310) homeobox protein engraile ( 333) 241 42.2 0.0014
NP_064447 (OMIM: 605212) barH-like 2 homeobox prot ( 387) 240 42.1 0.0016
NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304) 238 41.8 0.0017
NP_002500 (OMIM: 604612) homeobox protein Nkx-2.2 ( 273) 236 41.5 0.0018
NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 238 41.8 0.0019
NP_001417 (OMIM: 131290) homeobox protein engraile ( 392) 238 41.9 0.002
NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348) 237 41.7 0.002
NP_115485 (OMIM: 604529) homeobox protein orthoped ( 325) 236 41.5 0.0021
NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 236 41.6 0.0022
NP_055175 (OMIM: 603245) homeobox protein Nkx-2.8 ( 239) 232 40.9 0.0024
NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 233 41.1 0.0024
XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 233 41.1 0.0024
NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333) 234 41.3 0.0025
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 234 41.3 0.0026
NP_006159 (OMIM: 602563) homeobox protein Nkx-6.1 ( 367) 233 41.2 0.0029
XP_011519152 (OMIM: 607937) PREDICTED: homeobox pr ( 304) 231 40.9 0.0031
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 231 41.0 0.0034
NP_149416 (OMIM: 607808) homeobox protein Nkx-2.4 ( 354) 230 40.8 0.0037
>>NP_612138 (OMIM: 601911,616788) homeobox protein DLX-4 (240 aa)
initn: 1665 init1: 1665 opt: 1665 Z-score: 1163.0 bits: 222.6 E(85289): 4.9e-58
Smith-Waterman score: 1665; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KB7 MTSLPCPLPGRDASKAVFPDLAPVPSVAAAYPLGLSPTTAASPNLSYSRPYGHLLSYPYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MTSLPCPLPGRDASKAVFPDLAPVPSVAAAYPLGLSPTTAASPNLSYSRPYGHLLSYPYT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EPANPGDSYLSCQQPAALSQPLCGPAEHPQELEADSEKPRLSPEPSERRPQAPAKKLRKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 EPANPGDSYLSCQQPAALSQPLCGPAEHPQELEADSEKPRLSPEPSERRPQAPAKKLRKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 RTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 RTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 GGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM
190 200 210 220 230 240
>>NP_001925 (OMIM: 601911,616788) homeobox protein DLX-4 (168 aa)
initn: 1008 init1: 1008 opt: 1017 Z-score: 720.9 bits: 140.3 E(85289): 2.1e-33
Smith-Waterman score: 1017; 89.1% identity (89.7% similar) in 174 aa overlap (70-240:3-168)
40 50 60 70 80 90
pF1KB7 AASPNLSYSRPYGHLLSYPYTEPANPGDSYLSCQQPAALSQP---LCGPAEHPQELEADS
:: : .: : :: : : ::
NP_001 MKLSVLPPRSLLAPYTVLCCP---P-----DS
10 20
100 110 120 130 140 150
pF1KB7 EKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGL
30 40 50 60 70 80
160 170 180 190 200 210
pF1KB7 TQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTS
90 100 110 120 130 140
220 230 240
pF1KB7 GYGNSFGAWYQHHSSDVLASPQMM
::::::::::::::::::::::::
NP_001 GYGNSFGAWYQHHSSDVLASPQMM
150 160
>>XP_016879780 (OMIM: 601911,616788) PREDICTED: homeobox (168 aa)
initn: 1008 init1: 1008 opt: 1017 Z-score: 720.9 bits: 140.3 E(85289): 2.1e-33
Smith-Waterman score: 1017; 89.1% identity (89.7% similar) in 174 aa overlap (70-240:3-168)
40 50 60 70 80 90
pF1KB7 AASPNLSYSRPYGHLLSYPYTEPANPGDSYLSCQQPAALSQP---LCGPAEHPQELEADS
:: : .: : :: : : ::
XP_016 MKLSVLPPRSLLAPYTVLCCP---P-----DS
10 20
100 110 120 130 140 150
pF1KB7 EKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGL
30 40 50 60 70 80
160 170 180 190 200 210
pF1KB7 TQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTS
90 100 110 120 130 140
220 230 240
pF1KB7 GYGNSFGAWYQHHSSDVLASPQMM
::::::::::::::::::::::::
XP_016 GYGNSFGAWYQHHSSDVLASPQMM
150 160
>>NP_005213 (OMIM: 600030) homeobox protein DLX-6 [Homo (293 aa)
initn: 463 init1: 438 opt: 537 Z-score: 389.0 bits: 79.7 E(85289): 6.3e-15
Smith-Waterman score: 537; 40.6% identity (62.5% similar) in 251 aa overlap (5-240:48-293)
10 20 30
pF1KB7 MTSLPCPLPGRDASKAVFPDLAPVPSVAAAYPLG
: : : . :. : .: .: :::
NP_005 KSAFMEFGQQQQQQQQQQQQQQQQQQQPPPPPPPPPQPHSQQSSPAMA-----GAHYPLH
20 30 40 50 60 70
40 50 60 70 80
pF1KB7 LSPTTAASPNLSYSRPYGHLLSYPYTEPANPGDS-----------YLSCQQPAALSQPLC
..::. . . . : . . :. : . :.: .: . :
NP_005 CLHSAAAAAAAGSHHHHHHQHHHHGSPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQSYH
80 90 100 110 120 130
90 100 110 120 130 140
pF1KB7 GPAEHPQELEADSEKPRLSP-EPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYL
. . : :... . . : .: : .. .::.::::::::::::: ::.:::.::::
NP_005 NSSAAAQTRGDDTDQQKTTVIENGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYL
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB7 ALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLP
::::::.:::.::::::::::::::::::.::::::.:. .:.: . ..:: :: ::
NP_005 ALPERAELAASLGLTQTQVKIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSPRSPALP
200 210 220 230 240 250
210 220 230 240
pF1KB7 SLWDLP---KAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM
.::. :. ..: ..: ... ::. .:.. ::::
NP_005 PVWDVSASAKGVSMPPNSYMPGYSHWYSSPHQDTMQRPQMM
260 270 280 290
>>NP_835221 (OMIM: 600029) homeobox protein DLX-1 isofor (255 aa)
initn: 498 init1: 404 opt: 534 Z-score: 387.7 bits: 79.2 E(85289): 7.4e-15
Smith-Waterman score: 547; 43.9% identity (63.0% similar) in 262 aa overlap (1-240:3-255)
10 20 30 40
pF1KB7 MTSLPCPLPGRDASKAVF-----PD--LAPVPSVAAAYPL------GLS-PTTAASPN
::..: : . ..:::: :. ..: : . : . : : : : :
NP_835 MTMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 LSYSRPYGHLLSYPYTEPANPGDS--YLSCQQPAALSQPLCGPA-EHPQELEADSEKPRL
:.::: : :::.. .. : :.: : : : : : ::::: .
NP_835 SSFSRPLG----YPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPG---ADSEKSTV
70 80 90 100 110
110 120 130 140 150 160
pF1KB7 SPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQV
: .: : .. .::.::::::::::::: ::.:::.::::::::::.:::.::::::::
NP_835 V-EGGEVRFNGKGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQV
120 130 140 150 160 170
170 180 190 200 210
pF1KB7 KIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTSG----
::::::::::.:::.::.... ::. . ..: :::.: :. :.... ::
NP_835 KIWFQNKRSKFKKLMKQGGAALEGSALANGRALSAGSPPVPPGWN-PNSSSGKGSGGNAG
180 190 200 210 220 230
220 230 240
pF1KB7 -YGNSFGAWYQHHSSDVLASPQMM
: :. .:: .... .::.:
NP_835 SYIPSYTSWYPSAHQEAMQQPQLM
240 250
>>NP_004396 (OMIM: 126255) homeobox protein DLX-2 [Homo (328 aa)
initn: 393 init1: 337 opt: 426 Z-score: 312.3 bits: 65.6 E(85289): 1.2e-10
Smith-Waterman score: 426; 46.0% identity (64.0% similar) in 189 aa overlap (50-224:83-264)
20 30 40 50 60 70
pF1KB7 DLAPVPSVAAAYPLGLSPTTAASPNLSYSRPYGHLLSYPYTE------PANPGDSYLSCQ
::.:. :: : : . .::
NP_004 SPTLPVSTATDSSYYTNQQHPAGGGGGGGSPYAHMGSYQYQASGLNNVPYSAKSSYDLGY
60 70 80 90 100 110
80 90 100 110 120 130
pF1KB7 QPAALSQPLCGPAEHPQELEADSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLN
: : : . : :..: . . :: : .. ::.:::::::::.:: :.
NP_004 TAAYTSYAPYGTSSSP----ANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQ
120 130 140 150 160
140 150 160 170 180 190
pF1KB7 QRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFS
.:::.::::::::::.:::.::::::::::::::.:::.::. :.. .: . :: . :
NP_004 RRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSE-QHPGASAS
170 180 190 200 210 220
200 210 220 230 240
pF1KB7 VSPC-SPPL--PSLWDL--PK---AGTLPTSGYGNSFGAWYQHHSSDVLASPQMM
:: :::. :. ::. :. .: : :: :.. :.
NP_004 -PPCASPPVSAPASWDFGVPQRMAGGGGPGSG-GSGAGSSGSSPSSAASAFLGNYPWYHQ
230 240 250 260 270 280
NP_004 TSGSASHLQATAPLLHPTQTPQPHHHHHHHGGGGAPVSAGTIF
290 300 310 320
>>NP_005211 (OMIM: 104510,190320,600525) homeobox protei (287 aa)
initn: 410 init1: 342 opt: 406 Z-score: 299.4 bits: 63.0 E(85289): 6.2e-10
Smith-Waterman score: 411; 41.6% identity (58.8% similar) in 221 aa overlap (2-212:18-223)
10 20 30
pF1KB7 MTSLPCPLPGRDAS---KAVFPDL----APVPSVAAAYPLG--L
.:: : ..:. .. :: :: . .. : : .
NP_005 MSGSFDRKLSSILTDISSSLSCHAGSKDSPTLPESSVTDLGYYSAPQHDYYSGQPYGQTV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 SPTTAASP-NLSYSRPYGHLLSYPYTEPANPGDSYLSCQQPAALSQPLCGPAEHPQELEA
.: : ::. : .: . : :: : : ::: ::. : ..
NP_005 NPYTYHHQFNLNGLAGTG---AYSPKSEYTYGASYR--QYGAYREQPL--PAQDPVSVKE
70 80 90 100 110
100 110 120 130 140 150
pF1KB7 DSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQL
. :: : .. ::.::::::::: :: :..:::..:::::::::.:::::
NP_005 E-------PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQL
120 130 140 150 160
160 170 180 190 200 210
pF1KB7 GLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLP
:::::::::::::.:::.::: :.. : . :. . :.. ::: :.::: . .:
NP_005 GLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHS-PNNSDSMACNSPPSPALWDTSSHSTPA
170 180 190 200 210 220
220 230 240
pF1KB7 TSGYGNSFGAWYQHHSSDVLASPQMM
NP_005 PARSQLPPPLPYSASPSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPPNPGA
230 240 250 260 270 280
>>NP_005212 (OMIM: 220600,600028) homeobox protein DLX-5 (289 aa)
initn: 370 init1: 342 opt: 382 Z-score: 282.9 bits: 60.0 E(85289): 5.1e-09
Smith-Waterman score: 389; 35.8% identity (57.9% similar) in 240 aa overlap (19-233:35-267)
10 20 30 40
pF1KB7 MTSLPCPLPGRDASKAVFPDLAPVPSVAAAY--PLGLSPTTAASPNLS
: : .. . : : : .: ::.
NP_005 FDRRVPSIRSGDFQAPFQTSAAMHHPSQESPTLPESSATDSDYYSPTGGAPHGYCSPT--
10 20 30 40 50 60
50 60 70 80 90
pF1KB7 YSRPYGHLLS-YPY-------TEPANPGDSYLSCQQPAALSQPLCGPAEHPQELEADSEK
: ::. :. : : . . :. .: . . .. : . . :. : ..
NP_005 -SASYGKALNPYQYQYHGVNGSAGSYPAKAYADYSYASSYHQYGGAYNRVPS---ATNQP
70 80 90 100 110
100 110 120 130 140 150
pF1KB7 PRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQ
. :: : .. ::.:::::::::.:: :..:::.::::::::::.:::.:::::
NP_005 EKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQ
120 130 140 150 160 170
160 170 180 190 200
pF1KB7 TQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDL-----------
::::::::::::: ::..:.. : . :. . .. :: :..:.
NP_005 TQVKIWFQNKRSKIKKIMKNGEMPPEHS-PSSSDPMACNSPQSPAVWEPQGSSRSLSHHP
180 190 200 210 220 230
210 220 230 240
pF1KB7 ----PKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM
: .. :.:.: .. ..:: .:..
NP_005 HAHPPTSNQSPASSYLENSASWYTSAASSINSHLPPPGSLQHPLALASGTLY
240 250 260 270 280
>>XP_016867292 (OMIM: 220600,600028) PREDICTED: homeobox (161 aa)
initn: 330 init1: 330 opt: 358 Z-score: 269.6 bits: 56.7 E(85289): 2.8e-08
Smith-Waterman score: 365; 47.8% identity (70.1% similar) in 134 aa overlap (115-233:7-139)
90 100 110 120 130 140
pF1KB7 PAEHPQELEADSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLAL
::.:::::::::.:: :..:::.::::::
XP_016 MVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLAL
10 20 30
150 160 170 180 190 200
pF1KB7 PERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSL
::::.:::.:::::::::::::::::: ::..:.. : . :. . .. :: :..
XP_016 PERAELAASLGLTQTQVKIWFQNKRSKIKKIMKNGEMPPEHS-PSSSDPMACNSPQSPAV
40 50 60 70 80 90
210 220 230 240
pF1KB7 WDL---------------PKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM
:. : .. :.:.: .. ..:: .:..
XP_016 WEPQGSSRSLSHHPHAHPPTSNQSPASSYLENSASWYTSAASSINSHLPPPGSLQHPLAL
100 110 120 130 140 150
XP_016 ASGTLY
160
>>XP_005250242 (OMIM: 220600,600028) PREDICTED: homeobox (161 aa)
initn: 330 init1: 330 opt: 358 Z-score: 269.6 bits: 56.7 E(85289): 2.8e-08
Smith-Waterman score: 365; 47.8% identity (70.1% similar) in 134 aa overlap (115-233:7-139)
90 100 110 120 130 140
pF1KB7 PAEHPQELEADSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLAL
::.:::::::::.:: :..:::.::::::
XP_005 MVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLAL
10 20 30
150 160 170 180 190 200
pF1KB7 PERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSL
::::.:::.:::::::::::::::::: ::..:.. : . :. . .. :: :..
XP_005 PERAELAASLGLTQTQVKIWFQNKRSKIKKIMKNGEMPPEHS-PSSSDPMACNSPQSPAV
40 50 60 70 80 90
210 220 230 240
pF1KB7 WDL---------------PKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM
:. : .. :.:.: .. ..:: .:..
XP_005 WEPQGSSRSLSHHPHAHPPTSNQSPASSYLENSASWYTSAASSINSHLPPPGSLQHPLAL
100 110 120 130 140 150
XP_005 ASGTLY
160
240 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 09:52:41 2016 done: Sat Nov 5 09:52:42 2016
Total Scan time: 8.040 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]