Result of FASTA (ccds) for
pF1KB7506
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7506, 240 aa
1>>>pF1KB7506 240 - 240 aa - 240 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3394+/-0.000733; mu= 8.1564+/- 0.045
mean_var=191.7183+/-39.766, 0's: 0 Z-trim(116.2): 171 B-trim: 849 in 1/53
Lambda= 0.092628
statistics sampled from 16565 (16767) to 16565 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.515), width: 16
Scan time: 2.490
The best scores are: opt bits E(32554)
CCDS11555.1 DLX4 gene_id:1748|Hs108|chr17 ( 240) 1665 233.6 8.7e-62
CCDS45728.1 DLX4 gene_id:1748|Hs108|chr17 ( 168) 1017 146.9 8e-36
CCDS47647.2 DLX6 gene_id:1750|Hs108|chr7 ( 293) 537 83.0 2.4e-16
CCDS2247.2 DLX1 gene_id:1745|Hs108|chr2 ( 255) 534 82.5 2.9e-16
CCDS2248.1 DLX2 gene_id:1746|Hs108|chr2 ( 328) 426 68.2 7.5e-12
CCDS11556.1 DLX3 gene_id:1747|Hs108|chr17 ( 287) 406 65.5 4.4e-11
>>CCDS11555.1 DLX4 gene_id:1748|Hs108|chr17 (240 aa)
initn: 1665 init1: 1665 opt: 1665 Z-score: 1222.7 bits: 233.6 E(32554): 8.7e-62
Smith-Waterman score: 1665; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KB7 MTSLPCPLPGRDASKAVFPDLAPVPSVAAAYPLGLSPTTAASPNLSYSRPYGHLLSYPYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTSLPCPLPGRDASKAVFPDLAPVPSVAAAYPLGLSPTTAASPNLSYSRPYGHLLSYPYT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EPANPGDSYLSCQQPAALSQPLCGPAEHPQELEADSEKPRLSPEPSERRPQAPAKKLRKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EPANPGDSYLSCQQPAALSQPLCGPAEHPQELEADSEKPRLSPEPSERRPQAPAKKLRKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 RTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM
190 200 210 220 230 240
>>CCDS45728.1 DLX4 gene_id:1748|Hs108|chr17 (168 aa)
initn: 1008 init1: 1008 opt: 1017 Z-score: 756.6 bits: 146.9 E(32554): 8e-36
Smith-Waterman score: 1017; 89.1% identity (89.7% similar) in 174 aa overlap (70-240:3-168)
40 50 60 70 80 90
pF1KB7 AASPNLSYSRPYGHLLSYPYTEPANPGDSYLSCQQPAALSQP---LCGPAEHPQELEADS
:: : .: : :: : : ::
CCDS45 MKLSVLPPRSLLAPYTVLCCP---P-----DS
10 20
100 110 120 130 140 150
pF1KB7 EKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGL
30 40 50 60 70 80
160 170 180 190 200 210
pF1KB7 TQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTS
90 100 110 120 130 140
220 230 240
pF1KB7 GYGNSFGAWYQHHSSDVLASPQMM
::::::::::::::::::::::::
CCDS45 GYGNSFGAWYQHHSSDVLASPQMM
150 160
>>CCDS47647.2 DLX6 gene_id:1750|Hs108|chr7 (293 aa)
initn: 463 init1: 438 opt: 537 Z-score: 407.0 bits: 83.0 E(32554): 2.4e-16
Smith-Waterman score: 537; 40.6% identity (62.5% similar) in 251 aa overlap (5-240:48-293)
10 20 30
pF1KB7 MTSLPCPLPGRDASKAVFPDLAPVPSVAAAYPLG
: : : . :. : .: .: :::
CCDS47 KSAFMEFGQQQQQQQQQQQQQQQQQQQPPPPPPPPPQPHSQQSSPAMA-----GAHYPLH
20 30 40 50 60 70
40 50 60 70 80
pF1KB7 LSPTTAASPNLSYSRPYGHLLSYPYTEPANPGDS-----------YLSCQQPAALSQPLC
..::. . . . : . . :. : . :.: .: . :
CCDS47 CLHSAAAAAAAGSHHHHHHQHHHHGSPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQSYH
80 90 100 110 120 130
90 100 110 120 130 140
pF1KB7 GPAEHPQELEADSEKPRLSP-EPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYL
. . : :... . . : .: : .. .::.::::::::::::: ::.:::.::::
CCDS47 NSSAAAQTRGDDTDQQKTTVIENGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYL
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB7 ALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLP
::::::.:::.::::::::::::::::::.::::::.:. .:.: . ..:: :: ::
CCDS47 ALPERAELAASLGLTQTQVKIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSPRSPALP
200 210 220 230 240 250
210 220 230 240
pF1KB7 SLWDLP---KAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM
.::. :. ..: ..: ... ::. .:.. ::::
CCDS47 PVWDVSASAKGVSMPPNSYMPGYSHWYSSPHQDTMQRPQMM
260 270 280 290
>>CCDS2247.2 DLX1 gene_id:1745|Hs108|chr2 (255 aa)
initn: 498 init1: 404 opt: 534 Z-score: 405.6 bits: 82.5 E(32554): 2.9e-16
Smith-Waterman score: 547; 43.9% identity (63.0% similar) in 262 aa overlap (1-240:3-255)
10 20 30 40
pF1KB7 MTSLPCPLPGRDASKAVF-----PD--LAPVPSVAAAYPL------GLS-PTTAASPN
::..: : . ..:::: :. ..: : . : . : : : : :
CCDS22 MTMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 LSYSRPYGHLLSYPYTEPANPGDS--YLSCQQPAALSQPLCGPA-EHPQELEADSEKPRL
:.::: : :::.. .. : :.: : : : : : ::::: .
CCDS22 SSFSRPLG----YPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPG---ADSEKSTV
70 80 90 100 110
110 120 130 140 150 160
pF1KB7 SPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQV
: .: : .. .::.::::::::::::: ::.:::.::::::::::.:::.::::::::
CCDS22 V-EGGEVRFNGKGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQV
120 130 140 150 160 170
170 180 190 200 210
pF1KB7 KIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTSG----
::::::::::.:::.::.... ::. . ..: :::.: :. :.... ::
CCDS22 KIWFQNKRSKFKKLMKQGGAALEGSALANGRALSAGSPPVPPGWN-PNSSSGKGSGGNAG
180 190 200 210 220 230
220 230 240
pF1KB7 -YGNSFGAWYQHHSSDVLASPQMM
: :. .:: .... .::.:
CCDS22 SYIPSYTSWYPSAHQEAMQQPQLM
240 250
>>CCDS2248.1 DLX2 gene_id:1746|Hs108|chr2 (328 aa)
initn: 393 init1: 337 opt: 426 Z-score: 326.2 bits: 68.2 E(32554): 7.5e-12
Smith-Waterman score: 426; 46.0% identity (64.0% similar) in 189 aa overlap (50-224:83-264)
20 30 40 50 60 70
pF1KB7 DLAPVPSVAAAYPLGLSPTTAASPNLSYSRPYGHLLSYPYTE------PANPGDSYLSCQ
::.:. :: : : . .::
CCDS22 SPTLPVSTATDSSYYTNQQHPAGGGGGGGSPYAHMGSYQYQASGLNNVPYSAKSSYDLGY
60 70 80 90 100 110
80 90 100 110 120 130
pF1KB7 QPAALSQPLCGPAEHPQELEADSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLN
: : : . : :..: . . :: : .. ::.:::::::::.:: :.
CCDS22 TAAYTSYAPYGTSSSP----ANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQ
120 130 140 150 160
140 150 160 170 180 190
pF1KB7 QRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFS
.:::.::::::::::.:::.::::::::::::::.:::.::. :.. .: . :: . :
CCDS22 RRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSE-QHPGASAS
170 180 190 200 210 220
200 210 220 230 240
pF1KB7 VSPC-SPPL--PSLWDL--PK---AGTLPTSGYGNSFGAWYQHHSSDVLASPQMM
:: :::. :. ::. :. .: : :: :.. :.
CCDS22 -PPCASPPVSAPASWDFGVPQRMAGGGGPGSG-GSGAGSSGSSPSSAASAFLGNYPWYHQ
230 240 250 260 270 280
CCDS22 TSGSASHLQATAPLLHPTQTPQPHHHHHHHGGGGAPVSAGTIF
290 300 310 320
>>CCDS11556.1 DLX3 gene_id:1747|Hs108|chr17 (287 aa)
initn: 410 init1: 342 opt: 406 Z-score: 312.5 bits: 65.5 E(32554): 4.4e-11
Smith-Waterman score: 411; 41.6% identity (58.8% similar) in 221 aa overlap (2-212:18-223)
10 20 30
pF1KB7 MTSLPCPLPGRDAS---KAVFPDL----APVPSVAAAYPLG--L
.:: : ..:. .. :: :: . .. : : .
CCDS11 MSGSFDRKLSSILTDISSSLSCHAGSKDSPTLPESSVTDLGYYSAPQHDYYSGQPYGQTV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 SPTTAASP-NLSYSRPYGHLLSYPYTEPANPGDSYLSCQQPAALSQPLCGPAEHPQELEA
.: : ::. : .: . : :: : : ::: ::. : ..
CCDS11 NPYTYHHQFNLNGLAGTG---AYSPKSEYTYGASYR--QYGAYREQPL--PAQDPVSVKE
70 80 90 100 110
100 110 120 130 140 150
pF1KB7 DSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQL
. :: : .. ::.::::::::: :: :..:::..:::::::::.:::::
CCDS11 E-------PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQL
120 130 140 150 160
160 170 180 190 200 210
pF1KB7 GLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLP
:::::::::::::.:::.::: :.. : . :. . :.. ::: :.::: . .:
CCDS11 GLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHS-PNNSDSMACNSPPSPALWDTSSHSTPA
170 180 190 200 210 220
220 230 240
pF1KB7 TSGYGNSFGAWYQHHSSDVLASPQMM
CCDS11 PARSQLPPPLPYSASPSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPPNPGA
230 240 250 260 270 280
240 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 09:52:40 2016 done: Sat Nov 5 09:52:40 2016
Total Scan time: 2.490 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]