FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7397, 197 aa
  1>>>pF1KB7397 197 - 197 aa - 197 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5462+/-0.000765; mu= 17.1086+/- 0.046
 mean_var=57.4581+/-12.049, 0's: 0 Z-trim(107.4): 13  B-trim: 624 in 1/49
 Lambda= 0.169199
 statistics sampled from 9558 (9566) to 9558 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.294), width:  16
 Scan time:  1.560

The best scores are:                                      opt bits E(32554)
CCDS34526.1 NKAIN2 gene_id:154215|Hs108|chr6       ( 208)  875 221.4   3e-58
CCDS13514.1 NKAIN4 gene_id:128414|Hs108|chr20      ( 208)  840 212.9 1.1e-55
CCDS339.2 NKAIN1 gene_id:79570|Hs108|chr1          ( 207)  822 208.5 2.3e-54


>>CCDS34526.1 NKAIN2 gene_id:154215|Hs108|chr6            (208 aa)
 initn: 872 init1: 544 opt: 875  Z-score: 1159.3  bits: 221.4 E(32554): 3e-58
Smith-Waterman score: 875; 64.2% identity (87.2% similar) in 179 aa overlap (1-178:1-179)

               10        20        30        40        50        60
pF1KB7 MGCCTGRCSLICLCALQLVSALERQIFDFLGFQWAPILGNFLHIIVVILGLFGTIQYRPR
       :: :.:::.:: .:..::: .::::::::::.::::::.::.:::.::::::::::::::
CCDS34 MGYCSGRCTLIFICGMQLVCVLERQIFDFLGYQWAPILANFVHIIIVILGLFGTIQYRPR
               10        20        30        40        50        60

               70        80        90        100       110         
pF1KB7 YIMVYTVWTALWVTWNVFIICFYLEVGGLSKDTDL-MTFNISVHRSWWREHGPGCVRRVL
       ::  :.:: .::::::::.::::::.: :::.::: .:::::.::::: :.::::.   .
CCDS34 YITGYAVWLVLWVTWNVFVICFYLEAGDLSKETDLILTFNISMHRSWWMENGPGCTVTSV
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB7 PPSAHGMMDDYTYVSVTGCIVDFQYLEVIHSAVQILLSLVGFVYACYVISISMEEEDTYS
        :.     .:. :..:.::....::.:: ::..::.:.:.::.:::::..   ::::.. 
CCDS34 TPAPDWAPEDHRYITVSGCLLEYQYIEVAHSSLQIVLALAGFIYACYVVKCITEEEDSFD
              130       140       150       160       170       180

     180       190                 
pF1KB7 CDLQVCKHLFIQMLQIIE          
                                   
CCDS34 FIGGFDSYGYQGPQKTSHLQLQPMYMSK
              190       200        

>>CCDS13514.1 NKAIN4 gene_id:128414|Hs108|chr20           (208 aa)
 initn: 855 init1: 840 opt: 840  Z-score: 1113.1  bits: 212.9 E(32554): 1.1e-55
Smith-Waterman score: 840; 62.9% identity (86.5% similar) in 178 aa overlap (1-178:1-178)

               10        20        30        40        50        60
pF1KB7 MGCCTGRCSLICLCALQLVSALERQIFDFLGFQWAPILGNFLHIIVVILGLFGTIQYRPR
       :: :.:::.:. :::.:::.:::::.:::::.::::::.::.:::.:::::::::::: :
CCDS13 MGSCSGRCALVVLCAFQLVAALERQVFDFLGYQWAPILANFVHIIIVILGLFGTIQYRLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 YIMVYTVWTALWVTWNVFIICFYLEVGGLSKDTDLMTFNISVHRSWWREHGPGCVRRVLP
       :.::::.:.:.:::::::::::::::::: ::..:.::..: :::::::. :::... .:
CCDS13 YVMVYTLWAAVWVTWNVFIICFYLEVGGLLKDSELLTFSLSRHRSWWRERWPGCLHEEVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PSAHGMMDDYTYVSVTGCIVDFQYLEVIHSAVQILLSLVGFVYACYVISISMEEEDTYSC
         . :     . :: .:: .. .:.:..:: .:::..:.::: .: :.:.  ::::..  
CCDS13 AVGLGAPHGQALVSGAGCALEPSYVEALHSCLQILIALLGFVCGCQVVSVFTEEEDSFDF
              130       140       150       160       170       180

              190                  
pF1KB7 DLQVCKHLFIQMLQIIE           
                                   
CCDS13 IGGFDPFPLYHVNEKPSSLLSKQVYLPA
              190       200        

>>CCDS339.2 NKAIN1 gene_id:79570|Hs108|chr1               (207 aa)
 initn: 805 init1: 688 opt: 822  Z-score: 1089.4  bits: 208.5 E(32554): 2.3e-54
Smith-Waterman score: 822; 61.1% identity (86.1% similar) in 180 aa overlap (1-178:1-178)

               10        20        30        40        50        60
pF1KB7 MGCCTGRCSLICLCALQLVSALERQIFDFLGFQWAPILGNFLHIIVVILGLFGTIQYRPR
       :: :.:::.:. .: ::::.:::::::::::.::::::.:::::..::::.:::.::: :
CCDS33 MGKCSGRCTLVAFCCLQLVAALERQIFDFLGYQWAPILANFLHIMAVILGIFGTVQYRSR
               10        20        30        40        50        60

               70        80        90        100       110         
pF1KB7 YIMVYTVWTALWVTWNVFIICFYLEVGGLSKDTD-LMTFNISVHRSWWREHGPGCVRRVL
       :...:..: .::: ::.:::::::::: ::.: : .:::: :.::::: :.::::.  : 
CCDS33 YLILYAAWLVLWVGWNAFIICFYLEVGQLSQDRDFIMTFNTSLHRSWWMENGPGCL--VT
               70        80        90       100       110          

     120        130       140       150       160       170        
pF1KB7 PP-SAHGMMDDYTYVSVTGCIVDFQYLEVIHSAVQILLSLVGFVYACYVISISMEEEDTY
       :  ...  ..:.  .:::::..:. :.:.. ::.::.:.: :::.:::: .. .::::..
CCDS33 PVLNSRLALEDHHVISVTGCLLDYPYIEALSSALQIFLALFGFVFACYVSKVFLEEEDSF
      120       130       140       150       160       170        

      180       190                 
pF1KB7 SCDLQVCKHLFIQMLQIIE          
                                    
CCDS33 DFIGGFDSYGYQAPQKTSHLQLQPLYTSG
      180       190       200       




197 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:23:26 2016 done: Fri Nov  4 07:23:27 2016
 Total Scan time:  1.560 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]