FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7396, 192 aa
  1>>>pF1KB7396 192 - 192 aa - 192 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6152+/-0.000605; mu= 12.6065+/- 0.037
 mean_var=78.1538+/-15.418, 0's: 0 Z-trim(113.4): 7  B-trim: 71 in 1/51
 Lambda= 0.145077
 statistics sampled from 14030 (14034) to 14030 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.431), width:  16
 Scan time:  2.200

The best scores are:                                      opt bits E(32554)
CCDS45360.1 FAM169B gene_id:283777|Hs108|chr15     ( 192) 1344 289.7 7.4e-79
CCDS43330.1 FAM169A gene_id:26049|Hs108|chr5       ( 670)  347 81.4 1.3e-15


>>CCDS45360.1 FAM169B gene_id:283777|Hs108|chr15          (192 aa)
 initn: 1344 init1: 1344 opt: 1344  Z-score: 1529.2  bits: 289.7 E(32554): 7.4e-79
Smith-Waterman score: 1344; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KB7 MKVQSFGERVVLFILNAIIFGRLERNLDDDDMFFLPHSVKEQAKILWRRGAAVGFYTTKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MKVQSFGERVVLFILNAIIFGRLERNLDDDDMFFLPHSVKEQAKILWRRGAAVGFYTTKM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KGRLCGDGTGACYLLPVFDTVFIRRKHWHRGLGTAMLRDFCETFPEDEALGVSCSMSPAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KGRLCGDGTGACYLLPVFDTVFIRRKHWHRGLGTAMLRDFCETFPEDEALGVSCSMSPAM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 YQAHPGNSEDVSRHARTSQNDRPRQPAPGDGSKERMCGEELEDTKDDPECGVEEEDAGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YQAHPGNSEDVSRHARTSQNDRPRQPAPGDGSKERMCGEELEDTKDDPECGVEEEDAGLA
              130       140       150       160       170       180

              190  
pF1KB7 GQPPGKLTRSSP
       ::::::::::::
CCDS45 GQPPGKLTRSSP
              190  

>>CCDS43330.1 FAM169A gene_id:26049|Hs108|chr5            (670 aa)
 initn: 280 init1: 252 opt: 347  Z-score: 393.5  bits: 81.4 E(32554): 1.3e-15
Smith-Waterman score: 347; 41.5% identity (68.1% similar) in 135 aa overlap (2-129:106-237)

                                            10        20        30 
pF1KB7                              MKVQSFGERVVLFILNAIIFGRLERNLDDDD
                                     .:...::::::..:: ::. . :  .. ..
CCDS43 LTAVALYLADQWWAIDDIVKTSVPSREGLKQVSTLGERVVLYVLNRIIYRKQE--MERNE
          80        90       100       110       120         130   

              40        50        60        70        80        90 
pF1KB7 MFFLPHSVKEQAKILWRRGAAVGFYTTKMKGRLCGDGTGACYLLPVFDTVFIRRKHWHRG
       . :: ::  . :::::..: :.:::..:  : .:..     : :::.::.:.:.:.  . 
CCDS43 IPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVLDTMFLRKKYRGKD
           140       150       160       170       180       190   

             100       110       120              130       140    
pF1KB7 LGTAMLRDFCETFPEDEALGVSCSMSPAMYQA-------HPGNSEDVSRHARTSQNDRPR
       .:  ::.:: ..: :: :::.   .:  :: :       .::. :               
CCDS43 FGLHMLEDFVDSFTED-ALGLRYPLSSLMYTACKQYFEKYPGDHELLWEVEGVGHWYQRI
           200        210       220       230       240       250  

          150       160       170       180       190              
pF1KB7 QPAPGDGSKERMCGEELEDTKDDPECGVEEEDAGLAGQPPGKLTRSSP            
                                                                   
CCDS43 PVTRALQREALKILALSQNEPKRPMSGEYGPASVPEYEARTEDNQSSEMQLTIDSLKDAF
            260       270       280       290       300       310  




192 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:22:52 2016 done: Fri Nov  4 07:22:52 2016
 Total Scan time:  2.200 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]