FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7394, 204 aa
  1>>>pF1KB7394 204 - 204 aa - 204 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0993+/-0.000729; mu= 3.5480+/- 0.044
 mean_var=191.2465+/-39.386, 0's: 0 Z-trim(117.2): 59  B-trim: 1040 in 1/52
 Lambda= 0.092742
 statistics sampled from 17847 (17909) to 17847 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.55), width:  16
 Scan time:  2.140

The best scores are:                                      opt bits E(32554)
CCDS4894.2 CRIP3 gene_id:401262|Hs108|chr6         ( 204) 1564 220.1 7.7e-58
CCDS10003.1 CRIP2 gene_id:1397|Hs108|chr14         ( 208)  985 142.6 1.6e-34
CCDS59246.1 CRIP2 gene_id:1397|Hs108|chr14         ( 282)  929 135.2 3.7e-32


>>CCDS4894.2 CRIP3 gene_id:401262|Hs108|chr6              (204 aa)
 initn: 1564 init1: 1564 opt: 1564  Z-score: 1151.9  bits: 220.1 E(32554): 7.7e-58
Smith-Waterman score: 1564; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KB7 MSWTCPRCQQPVFFAEKVSSLGKNWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MSWTCPRCQQPVFFAEKVSSLGKNWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LFGPRGVNIGGVGSYLYNPPTPSPGCTTPLSPSSFSPPRPRTGLPQGKKSPPHMKTFTGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LFGPRGVNIGGVGSYLYNPPTPSPGCTTPLSPSSFSPPRPRTGLPQGKKSPPHMKTFTGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 TSLCPGCGEPVYFAEKVMSLGRNWHRPCLRCQRCHKTLTAGSHAEHDGVPYCHVPCYGYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TSLCPGCGEPVYFAEKVMSLGRNWHRPCLRCQRCHKTLTAGSHAEHDGVPYCHVPCYGYL
              130       140       150       160       170       180

              190       200    
pF1KB7 FGPKGVNIGDVGCYIYDPVKIKFK
       ::::::::::::::::::::::::
CCDS48 FGPKGVNIGDVGCYIYDPVKIKFK
              190       200    

>>CCDS10003.1 CRIP2 gene_id:1397|Hs108|chr14              (208 aa)
 initn: 959 init1: 480 opt: 985  Z-score: 733.1  bits: 142.6 E(32554): 1.6e-34
Smith-Waterman score: 985; 63.3% identity (80.9% similar) in 199 aa overlap (1-197:1-199)

               10        20        30        40        50        60
pF1KB7 MSWTCPRCQQPVFFAEKVSSLGKNWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYGA
       :.  ::.:.. :.::::::::::.::.:::::::: . :.:::::::.:.:.::::::..
CCDS10 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT
               10        20        30        40        50        60

               70        80         90        100       110        
pF1KB7 LFGPRGVNIGGVGSYLYNPP-TPSPGCTTPLS-PSSFSPPRPRTGLPQGKKSPPHMKTFT
       ::::.::::::.:::.:. : . .:  : :.  :.. .  :  .: :.: .    . :::
CCDS10 LFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFT
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KB7 GETSLCPGCGEPVYFAEKVMSLGRNWHRPCLRCQRCHKTLTAGSHAEHDGVPYCHVPCYG
       :: . :: :.. ::::::: :::..::::::::.:: :::: :.:::::: :::: ::::
CCDS10 GEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCYG
              130       140       150       160       170       180

      180       190       200      
pF1KB7 YLFGPKGVNIGDVGCYIYDPVKIKFK  
        :::::::: : :: ::::         
CCDS10 ILFGPKGVNTGAVGSYIYDRDPEGKVQP
              190       200        

>>CCDS59246.1 CRIP2 gene_id:1397|Hs108|chr14              (282 aa)
 initn: 882 init1: 480 opt: 929  Z-score: 690.8  bits: 135.2 E(32554): 3.7e-32
Smith-Waterman score: 929; 62.6% identity (78.3% similar) in 198 aa overlap (2-197:77-273)

                                            10        20        30 
pF1KB7                              MSWTCPRCQQPVFFAEKVSSLGKNWHRFCLK
                                     : ::   .:    :::::::::.::.::::
CCDS59 GCVCKGGGCCHREPSQDHHESQEHRGPLVGSQTC-LVHQAEGTAEKVSSLGKDWHKFCLK
         50        60        70        80         90       100     

              40        50        60        70        80         90
pF1KB7 CERCHSILSPGGHAEHNGRPYCHKPCYGALFGPRGVNIGGVGSYLYNPP-TPSPGCTTPL
       :::: . :.:::::::.:.:.::::::..::::.::::::.:::.:. : . .:  : :.
CCDS59 CERCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPLAEGPQVTGPI
         110       120       130       140       150       160     

               100       110       120       130       140         
pF1KB7 S-PSSFSPPRPRTGLPQGKKSPPHMKTFTGETSLCPGCGEPVYFAEKVMSLGRNWHRPCL
         :.. .  :  .: :.: .    . ::::: . :: :.. ::::::: :::..::::::
CCDS59 EVPAARAEERKASGPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCL
         170       180       190       200       210       220     

     150       160       170       180       190       200      
pF1KB7 RCQRCHKTLTAGSHAEHDGVPYCHVPCYGYLFGPKGVNIGDVGCYIYDPVKIKFK  
       ::.:: :::: :.:::::: :::: :::: :::::::: : :: ::::         
CCDS59 RCERCGKTLTPGGHAEHDGQPYCHKPCYGILFGPKGVNTGAVGSYIYDRDPEGKVQP
         230       240       250       260       270       280  




204 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:21:48 2016 done: Fri Nov  4 07:21:48 2016
 Total Scan time:  2.140 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]