Result of FASTA (omim) for
pF1KB7392
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7392, 340 aa
1>>>pF1KB7392 340 - 340 aa - 340 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.8754+/-0.000374; mu= -4.4880+/- 0.023
mean_var=250.1213+/-49.353, 0's: 0 Z-trim(121.2): 9 B-trim: 0 in 0/60
Lambda= 0.081096
statistics sampled from 37541 (37550) to 37541 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.44), width: 16
Scan time: 8.780
The best scores are: opt bits E(85289)
XP_016880318 (OMIM: 616624) PREDICTED: nuclear cap ( 340) 2229 273.4 4.9e-73
XP_016880315 (OMIM: 616624) PREDICTED: nuclear cap ( 485) 2229 273.5 6.5e-73
NP_001107590 (OMIM: 616624) nuclear cap-binding pr ( 620) 2229 273.6 7.9e-73
XP_016880317 (OMIM: 616624) PREDICTED: nuclear cap ( 352) 2095 257.7 2.6e-68
XP_016880316 (OMIM: 616624) PREDICTED: nuclear cap ( 352) 2095 257.7 2.6e-68
XP_006721619 (OMIM: 616624) PREDICTED: nuclear cap ( 497) 2095 257.8 3.5e-68
XP_011522257 (OMIM: 616624) PREDICTED: nuclear cap ( 497) 2095 257.8 3.5e-68
XP_011522256 (OMIM: 616624) PREDICTED: nuclear cap ( 518) 2095 257.9 3.6e-68
XP_005256774 (OMIM: 616624) PREDICTED: nuclear cap ( 632) 2095 257.9 4.2e-68
>>XP_016880318 (OMIM: 616624) PREDICTED: nuclear cap-bin (340 aa)
initn: 2229 init1: 2229 opt: 2229 Z-score: 1432.2 bits: 273.4 E(85289): 4.9e-73
Smith-Waterman score: 2229; 100.0% identity (100.0% similar) in 340 aa overlap (1-340:1-340)
10 20 30 40 50 60
pF1KB7 MKYGNPNYGGMKGILSNSWKRRYHSRRIQRDVIKKRALIGDDVGLTSYKHRHSGLVNVPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKYGNPNYGGMKGILSNSWKRRYHSRRIQRDVIKKRALIGDDVGLTSYKHRHSGLVNVPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EPIEEEEEEEEEEEEEEEEDQDMDADDRVVVEYHEELPALKQPRERSASRRSSASSSDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPIEEEEEEEEEEEEEEEEDQDMDADDRVVVEYHEELPALKQPRERSASRRSSASSSDSD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EMDYDLELKMISTPSPKKSMKMTMYADEVESQLKNIRNSMRADSVSSSNIKNRIGNKLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EMDYDLELKMISTPSPKKSMKMTMYADEVESQLKNIRNSMRADSVSSSNIKNRIGNKLPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EKFADVRHLLDEKRQHSRPRPPVSSTKSDIRQRLGKRPHSPEKAFSSNPVVRREPSSDVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKFADVRHLLDEKRQHSRPRPPVSSTKSDIRQRLGKRPHSPEKAFSSNPVVRREPSSDVH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 SRLGVPRQDSKGLYADTREKKSGNLWTRLGSAPKTKEKNTKKVDHRAPGAEEDDSELQRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRLGVPRQDSKGLYADTREKKSGNLWTRLGSAPKTKEKNTKKVDHRAPGAEEDDSELQRA
250 260 270 280 290 300
310 320 330 340
pF1KB7 WGALIKEKEQSRQKKSRLDNLPSLQIEVSRESSSGSEAES
::::::::::::::::::::::::::::::::::::::::
XP_016 WGALIKEKEQSRQKKSRLDNLPSLQIEVSRESSSGSEAES
310 320 330 340
>>XP_016880315 (OMIM: 616624) PREDICTED: nuclear cap-bin (485 aa)
initn: 2229 init1: 2229 opt: 2229 Z-score: 1430.0 bits: 273.5 E(85289): 6.5e-73
Smith-Waterman score: 2229; 100.0% identity (100.0% similar) in 340 aa overlap (1-340:146-485)
10 20 30
pF1KB7 MKYGNPNYGGMKGILSNSWKRRYHSRRIQR
::::::::::::::::::::::::::::::
XP_016 KLAKGNRLFMRFATKDDKKELGAARRSQYYMKYGNPNYGGMKGILSNSWKRRYHSRRIQR
120 130 140 150 160 170
40 50 60 70 80 90
pF1KB7 DVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEEEEEEDQDMDADDRVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEEEEEEDQDMDADDRVV
180 190 200 210 220 230
100 110 120 130 140 150
pF1KB7 VEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVE
240 250 260 270 280 290
160 170 180 190 200 210
pF1KB7 SQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLDEKRQHSRPRPPVSSTKSDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLDEKRQHSRPRPPVSSTKSDI
300 310 320 330 340 350
220 230 240 250 260 270
pF1KB7 RQRLGKRPHSPEKAFSSNPVVRREPSSDVHSRLGVPRQDSKGLYADTREKKSGNLWTRLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQRLGKRPHSPEKAFSSNPVVRREPSSDVHSRLGVPRQDSKGLYADTREKKSGNLWTRLG
360 370 380 390 400 410
280 290 300 310 320 330
pF1KB7 SAPKTKEKNTKKVDHRAPGAEEDDSELQRAWGALIKEKEQSRQKKSRLDNLPSLQIEVSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SAPKTKEKNTKKVDHRAPGAEEDDSELQRAWGALIKEKEQSRQKKSRLDNLPSLQIEVSR
420 430 440 450 460 470
340
pF1KB7 ESSSGSEAES
::::::::::
XP_016 ESSSGSEAES
480
>>NP_001107590 (OMIM: 616624) nuclear cap-binding protei (620 aa)
initn: 2229 init1: 2229 opt: 2229 Z-score: 1428.5 bits: 273.6 E(85289): 7.9e-73
Smith-Waterman score: 2229; 100.0% identity (100.0% similar) in 340 aa overlap (1-340:281-620)
10 20 30
pF1KB7 MKYGNPNYGGMKGILSNSWKRRYHSRRIQR
::::::::::::::::::::::::::::::
NP_001 KLAKGNRLFMRFATKDDKKELGAARRSQYYMKYGNPNYGGMKGILSNSWKRRYHSRRIQR
260 270 280 290 300 310
40 50 60 70 80 90
pF1KB7 DVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEEEEEEDQDMDADDRVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEEEEEEDQDMDADDRVV
320 330 340 350 360 370
100 110 120 130 140 150
pF1KB7 VEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVE
380 390 400 410 420 430
160 170 180 190 200 210
pF1KB7 SQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLDEKRQHSRPRPPVSSTKSDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLDEKRQHSRPRPPVSSTKSDI
440 450 460 470 480 490
220 230 240 250 260 270
pF1KB7 RQRLGKRPHSPEKAFSSNPVVRREPSSDVHSRLGVPRQDSKGLYADTREKKSGNLWTRLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQRLGKRPHSPEKAFSSNPVVRREPSSDVHSRLGVPRQDSKGLYADTREKKSGNLWTRLG
500 510 520 530 540 550
280 290 300 310 320 330
pF1KB7 SAPKTKEKNTKKVDHRAPGAEEDDSELQRAWGALIKEKEQSRQKKSRLDNLPSLQIEVSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAPKTKEKNTKKVDHRAPGAEEDDSELQRAWGALIKEKEQSRQKKSRLDNLPSLQIEVSR
560 570 580 590 600 610
340
pF1KB7 ESSSGSEAES
::::::::::
NP_001 ESSSGSEAES
620
>>XP_016880317 (OMIM: 616624) PREDICTED: nuclear cap-bin (352 aa)
initn: 2093 init1: 2093 opt: 2095 Z-score: 1347.3 bits: 257.7 E(85289): 2.6e-68
Smith-Waterman score: 2095; 98.8% identity (99.1% similar) in 322 aa overlap (1-322:1-322)
10 20 30 40 50 60
pF1KB7 MKYGNPNYGGMKGILSNSWKRRYHSRRIQRDVIKKRALIGDDVGLTSYKHRHSGLVNVPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKYGNPNYGGMKGILSNSWKRRYHSRRIQRDVIKKRALIGDDVGLTSYKHRHSGLVNVPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EPIEEEEEEEEEEEEEEEEDQDMDADDRVVVEYHEELPALKQPRERSASRRSSASSSDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPIEEEEEEEEEEEEEEEEDQDMDADDRVVVEYHEELPALKQPRERSASRRSSASSSDSD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EMDYDLELKMISTPSPKKSMKMTMYADEVESQLKNIRNSMRADSVSSSNIKNRIGNKLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EMDYDLELKMISTPSPKKSMKMTMYADEVESQLKNIRNSMRADSVSSSNIKNRIGNKLPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EKFADVRHLLDEKRQHSRPRPPVSSTKSDIRQRLGKRPHSPEKAFSSNPVVRREPSSDVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKFADVRHLLDEKRQHSRPRPPVSSTKSDIRQRLGKRPHSPEKAFSSNPVVRREPSSDVH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 SRLGVPRQDSKGLYADTREKKSGNLWTRLGSAPKTKEKNTKKVDHRAPGAEEDDSELQRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRLGVPRQDSKGLYADTREKKSGNLWTRLGSAPKTKEKNTKKVDHRAPGAEEDDSELQRA
250 260 270 280 290 300
310 320 330 340
pF1KB7 WGALIKEKEQSRQKKSRLDNLPSLQIEVSRESSSGSEAES
::::::::::::::::: . :
XP_016 WGALIKEKEQSRQKKSRCYQHPFPKKSQFPGAYWTSFEGEEEGSGQLTLPGP
310 320 330 340 350
>>XP_016880316 (OMIM: 616624) PREDICTED: nuclear cap-bin (352 aa)
initn: 2093 init1: 2093 opt: 2095 Z-score: 1347.3 bits: 257.7 E(85289): 2.6e-68
Smith-Waterman score: 2095; 98.8% identity (99.1% similar) in 322 aa overlap (1-322:1-322)
10 20 30 40 50 60
pF1KB7 MKYGNPNYGGMKGILSNSWKRRYHSRRIQRDVIKKRALIGDDVGLTSYKHRHSGLVNVPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKYGNPNYGGMKGILSNSWKRRYHSRRIQRDVIKKRALIGDDVGLTSYKHRHSGLVNVPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EPIEEEEEEEEEEEEEEEEDQDMDADDRVVVEYHEELPALKQPRERSASRRSSASSSDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPIEEEEEEEEEEEEEEEEDQDMDADDRVVVEYHEELPALKQPRERSASRRSSASSSDSD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EMDYDLELKMISTPSPKKSMKMTMYADEVESQLKNIRNSMRADSVSSSNIKNRIGNKLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EMDYDLELKMISTPSPKKSMKMTMYADEVESQLKNIRNSMRADSVSSSNIKNRIGNKLPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EKFADVRHLLDEKRQHSRPRPPVSSTKSDIRQRLGKRPHSPEKAFSSNPVVRREPSSDVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKFADVRHLLDEKRQHSRPRPPVSSTKSDIRQRLGKRPHSPEKAFSSNPVVRREPSSDVH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 SRLGVPRQDSKGLYADTREKKSGNLWTRLGSAPKTKEKNTKKVDHRAPGAEEDDSELQRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRLGVPRQDSKGLYADTREKKSGNLWTRLGSAPKTKEKNTKKVDHRAPGAEEDDSELQRA
250 260 270 280 290 300
310 320 330 340
pF1KB7 WGALIKEKEQSRQKKSRLDNLPSLQIEVSRESSSGSEAES
::::::::::::::::: . :
XP_016 WGALIKEKEQSRQKKSRCYQHPFPKKSQFPGAYWTSFEGEEEGSGQLTLPGP
310 320 330 340 350
>>XP_006721619 (OMIM: 616624) PREDICTED: nuclear cap-bin (497 aa)
initn: 2093 init1: 2093 opt: 2095 Z-score: 1345.1 bits: 257.8 E(85289): 3.5e-68
Smith-Waterman score: 2095; 98.8% identity (99.1% similar) in 322 aa overlap (1-322:146-467)
10 20 30
pF1KB7 MKYGNPNYGGMKGILSNSWKRRYHSRRIQR
::::::::::::::::::::::::::::::
XP_006 KLAKGNRLFMRFATKDDKKELGAARRSQYYMKYGNPNYGGMKGILSNSWKRRYHSRRIQR
120 130 140 150 160 170
40 50 60 70 80 90
pF1KB7 DVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEEEEEEDQDMDADDRVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEEEEEEDQDMDADDRVV
180 190 200 210 220 230
100 110 120 130 140 150
pF1KB7 VEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVE
240 250 260 270 280 290
160 170 180 190 200 210
pF1KB7 SQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLDEKRQHSRPRPPVSSTKSDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLDEKRQHSRPRPPVSSTKSDI
300 310 320 330 340 350
220 230 240 250 260 270
pF1KB7 RQRLGKRPHSPEKAFSSNPVVRREPSSDVHSRLGVPRQDSKGLYADTREKKSGNLWTRLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RQRLGKRPHSPEKAFSSNPVVRREPSSDVHSRLGVPRQDSKGLYADTREKKSGNLWTRLG
360 370 380 390 400 410
280 290 300 310 320 330
pF1KB7 SAPKTKEKNTKKVDHRAPGAEEDDSELQRAWGALIKEKEQSRQKKSRLDNLPSLQIEVSR
::::::::::::::::::::::::::::::::::::::::::::::: . :
XP_006 SAPKTKEKNTKKVDHRAPGAEEDDSELQRAWGALIKEKEQSRQKKSRCYQHPFPKKSQFP
420 430 440 450 460 470
340
pF1KB7 ESSSGSEAES
XP_006 GAYWTSFEGEEEGSGQLTLPGP
480 490
>>XP_011522257 (OMIM: 616624) PREDICTED: nuclear cap-bin (497 aa)
initn: 2093 init1: 2093 opt: 2095 Z-score: 1345.1 bits: 257.8 E(85289): 3.5e-68
Smith-Waterman score: 2095; 98.8% identity (99.1% similar) in 322 aa overlap (1-322:146-467)
10 20 30
pF1KB7 MKYGNPNYGGMKGILSNSWKRRYHSRRIQR
::::::::::::::::::::::::::::::
XP_011 KLAKGNRLFMRFATKDDKKELGAARRSQYYMKYGNPNYGGMKGILSNSWKRRYHSRRIQR
120 130 140 150 160 170
40 50 60 70 80 90
pF1KB7 DVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEEEEEEDQDMDADDRVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEEEEEEDQDMDADDRVV
180 190 200 210 220 230
100 110 120 130 140 150
pF1KB7 VEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVE
240 250 260 270 280 290
160 170 180 190 200 210
pF1KB7 SQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLDEKRQHSRPRPPVSSTKSDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLDEKRQHSRPRPPVSSTKSDI
300 310 320 330 340 350
220 230 240 250 260 270
pF1KB7 RQRLGKRPHSPEKAFSSNPVVRREPSSDVHSRLGVPRQDSKGLYADTREKKSGNLWTRLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQRLGKRPHSPEKAFSSNPVVRREPSSDVHSRLGVPRQDSKGLYADTREKKSGNLWTRLG
360 370 380 390 400 410
280 290 300 310 320 330
pF1KB7 SAPKTKEKNTKKVDHRAPGAEEDDSELQRAWGALIKEKEQSRQKKSRLDNLPSLQIEVSR
::::::::::::::::::::::::::::::::::::::::::::::: . :
XP_011 SAPKTKEKNTKKVDHRAPGAEEDDSELQRAWGALIKEKEQSRQKKSRCYQHPFPKKSQFP
420 430 440 450 460 470
340
pF1KB7 ESSSGSEAES
XP_011 GAYWTSFEGEEEGSGQLTLPGP
480 490
>>XP_011522256 (OMIM: 616624) PREDICTED: nuclear cap-bin (518 aa)
initn: 2093 init1: 2093 opt: 2095 Z-score: 1344.9 bits: 257.9 E(85289): 3.6e-68
Smith-Waterman score: 2095; 98.8% identity (99.1% similar) in 322 aa overlap (1-322:167-488)
10 20 30
pF1KB7 MKYGNPNYGGMKGILSNSWKRRYHSRRIQR
::::::::::::::::::::::::::::::
XP_011 KLAKGNRLFMRFATKDDKKELGAARRSQYYMKYGNPNYGGMKGILSNSWKRRYHSRRIQR
140 150 160 170 180 190
40 50 60 70 80 90
pF1KB7 DVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEEEEEEDQDMDADDRVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEEEEEEDQDMDADDRVV
200 210 220 230 240 250
100 110 120 130 140 150
pF1KB7 VEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVE
260 270 280 290 300 310
160 170 180 190 200 210
pF1KB7 SQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLDEKRQHSRPRPPVSSTKSDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLDEKRQHSRPRPPVSSTKSDI
320 330 340 350 360 370
220 230 240 250 260 270
pF1KB7 RQRLGKRPHSPEKAFSSNPVVRREPSSDVHSRLGVPRQDSKGLYADTREKKSGNLWTRLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQRLGKRPHSPEKAFSSNPVVRREPSSDVHSRLGVPRQDSKGLYADTREKKSGNLWTRLG
380 390 400 410 420 430
280 290 300 310 320 330
pF1KB7 SAPKTKEKNTKKVDHRAPGAEEDDSELQRAWGALIKEKEQSRQKKSRLDNLPSLQIEVSR
::::::::::::::::::::::::::::::::::::::::::::::: . :
XP_011 SAPKTKEKNTKKVDHRAPGAEEDDSELQRAWGALIKEKEQSRQKKSRCYQHPFPKKSQFP
440 450 460 470 480 490
340
pF1KB7 ESSSGSEAES
XP_011 GAYWTSFEGEEEGSGQLTLPGP
500 510
>>XP_005256774 (OMIM: 616624) PREDICTED: nuclear cap-bin (632 aa)
initn: 2093 init1: 2093 opt: 2095 Z-score: 1343.6 bits: 257.9 E(85289): 4.2e-68
Smith-Waterman score: 2095; 98.8% identity (99.1% similar) in 322 aa overlap (1-322:281-602)
10 20 30
pF1KB7 MKYGNPNYGGMKGILSNSWKRRYHSRRIQR
::::::::::::::::::::::::::::::
XP_005 KLAKGNRLFMRFATKDDKKELGAARRSQYYMKYGNPNYGGMKGILSNSWKRRYHSRRIQR
260 270 280 290 300 310
40 50 60 70 80 90
pF1KB7 DVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEEEEEEDQDMDADDRVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEEEEEEDQDMDADDRVV
320 330 340 350 360 370
100 110 120 130 140 150
pF1KB7 VEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVE
380 390 400 410 420 430
160 170 180 190 200 210
pF1KB7 SQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLDEKRQHSRPRPPVSSTKSDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLDEKRQHSRPRPPVSSTKSDI
440 450 460 470 480 490
220 230 240 250 260 270
pF1KB7 RQRLGKRPHSPEKAFSSNPVVRREPSSDVHSRLGVPRQDSKGLYADTREKKSGNLWTRLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RQRLGKRPHSPEKAFSSNPVVRREPSSDVHSRLGVPRQDSKGLYADTREKKSGNLWTRLG
500 510 520 530 540 550
280 290 300 310 320 330
pF1KB7 SAPKTKEKNTKKVDHRAPGAEEDDSELQRAWGALIKEKEQSRQKKSRLDNLPSLQIEVSR
::::::::::::::::::::::::::::::::::::::::::::::: . :
XP_005 SAPKTKEKNTKKVDHRAPGAEEDDSELQRAWGALIKEKEQSRQKKSRCYQHPFPKKSQFP
560 570 580 590 600 610
340
pF1KB7 ESSSGSEAES
XP_005 GAYWTSFEGEEEGSGQLTLPGP
620 630
340 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 07:10:51 2016 done: Fri Nov 4 07:10:52 2016
Total Scan time: 8.780 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]