FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7392, 340 aa
  1>>>pF1KB7392 340 - 340 aa - 340 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2325+/-0.000926; mu= -0.7814+/- 0.056
 mean_var=222.4601+/-44.596, 0's: 0 Z-trim(113.3): 7  B-trim: 0 in 0/55
 Lambda= 0.085990
 statistics sampled from 13963 (13967) to 13963 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.429), width:  16
 Scan time:  3.160

The best scores are:                                      opt bits E(32554)
CCDS45578.1 NCBP3 gene_id:55421|Hs108|chr17        ( 620) 2229 289.0 6.9e-78


>>CCDS45578.1 NCBP3 gene_id:55421|Hs108|chr17             (620 aa)
 initn: 2229 init1: 2229 opt: 2229  Z-score: 1511.8  bits: 289.0 E(32554): 6.9e-78
Smith-Waterman score: 2229; 100.0% identity (100.0% similar) in 340 aa overlap (1-340:281-620)

                                             10        20        30
pF1KB7                               MKYGNPNYGGMKGILSNSWKRRYHSRRIQR
                                     ::::::::::::::::::::::::::::::
CCDS45 KLAKGNRLFMRFATKDDKKELGAARRSQYYMKYGNPNYGGMKGILSNSWKRRYHSRRIQR
              260       270       280       290       300       310

               40        50        60        70        80        90
pF1KB7 DVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEEEEEEDQDMDADDRVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEEEEEEDQDMDADDRVV
              320       330       340       350       360       370

              100       110       120       130       140       150
pF1KB7 VEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVE
              380       390       400       410       420       430

              160       170       180       190       200       210
pF1KB7 SQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLDEKRQHSRPRPPVSSTKSDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLDEKRQHSRPRPPVSSTKSDI
              440       450       460       470       480       490

              220       230       240       250       260       270
pF1KB7 RQRLGKRPHSPEKAFSSNPVVRREPSSDVHSRLGVPRQDSKGLYADTREKKSGNLWTRLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RQRLGKRPHSPEKAFSSNPVVRREPSSDVHSRLGVPRQDSKGLYADTREKKSGNLWTRLG
              500       510       520       530       540       550

              280       290       300       310       320       330
pF1KB7 SAPKTKEKNTKKVDHRAPGAEEDDSELQRAWGALIKEKEQSRQKKSRLDNLPSLQIEVSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SAPKTKEKNTKKVDHRAPGAEEDDSELQRAWGALIKEKEQSRQKKSRLDNLPSLQIEVSR
              560       570       580       590       600       610

              340
pF1KB7 ESSSGSEAES
       ::::::::::
CCDS45 ESSSGSEAES
              620




340 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:10:50 2016 done: Fri Nov  4 07:10:50 2016
 Total Scan time:  3.160 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]