FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7391, 231 aa
  1>>>pF1KB7391 231 - 231 aa - 231 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4194+/-0.000836; mu= 15.4808+/- 0.050
 mean_var=149.6132+/-26.602, 0's: 0 Z-trim(114.0): 77  B-trim: 0 in 0/51
 Lambda= 0.104855
 statistics sampled from 14479 (14567) to 14479 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.447), width:  16
 Scan time:  2.410

The best scores are:                                      opt bits E(32554)
CCDS33478.1 WFDC3 gene_id:140686|Hs108|chr20       ( 231) 1759 277.0 7.2e-75


>>CCDS33478.1 WFDC3 gene_id:140686|Hs108|chr20            (231 aa)
 initn: 1759 init1: 1759 opt: 1759  Z-score: 1457.6  bits: 277.0 E(32554): 7.2e-75
Smith-Waterman score: 1759; 100.0% identity (100.0% similar) in 231 aa overlap (1-231:1-231)

               10        20        30        40        50        60
pF1KB7 MMLSCLFLLKALLALGSLESWITAGEHAKEGECPPHKNPCKELCQGDELCPAEQKCCTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MMLSCLFLLKALLALGSLESWITAGEHAKEGECPPHKNPCKELCQGDELCPAEQKCCTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 CGRICRDIPKGRKRDCPRVIRKQSCLKRCITDETCPGVKKCCTLGCNKSCVVPISKQKLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CGRICRDIPKGRKRDCPRVIRKQSCLKRCITDETCPGVKKCCTLGCNKSCVVPISKQKLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EFGGECPADPLPCEELCDGDASCPQGHKCCSTGCGRTCLGDIEGGRGGDCPKVLVGLCIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EFGGECPADPLPCEELCDGDASCPQGHKCCSTGCGRTCLGDIEGGRGGDCPKVLVGLCIV
              130       140       150       160       170       180

              190       200       210       220       230 
pF1KB7 GCVMDENCQAGEKCCKSGCGRFCVPPVLPPKLTMNPNWTVRSDSELEIPVP
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GCVMDENCQAGEKCCKSGCGRFCVPPVLPPKLTMNPNWTVRSDSELEIPVP
              190       200       210       220       230 




231 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:10:14 2016 done: Fri Nov  4 07:10:15 2016
 Total Scan time:  2.410 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]