Result of FASTA (omim) for
pF1KB7376
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7376, 330 aa
1>>>pF1KB7376 330 - 330 aa - 330 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8111+/-0.00034; mu= 14.4638+/- 0.021
mean_var=84.7822+/-16.606, 0's: 0 Z-trim(116.1): 10 B-trim: 317 in 1/51
Lambda= 0.139291
statistics sampled from 27022 (27032) to 27022 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.317), width: 16
Scan time: 7.610
The best scores are: opt bits E(85289)
NP_872295 (OMIM: 609987) stimulated by retinoic ac ( 330) 2168 445.2 8.8e-125
XP_011514441 (OMIM: 609987) PREDICTED: stimulated ( 379) 1200 250.7 3.6e-66
XP_011514439 (OMIM: 609987) PREDICTED: stimulated ( 379) 1200 250.7 3.6e-66
XP_011514440 (OMIM: 609987) PREDICTED: stimulated ( 379) 1200 250.7 3.6e-66
XP_016867639 (OMIM: 609987) PREDICTED: stimulated ( 239) 809 172.0 1.1e-42
>>NP_872295 (OMIM: 609987) stimulated by retinoic acid g (330 aa)
initn: 2168 init1: 2168 opt: 2168 Z-score: 2361.2 bits: 445.2 E(85289): 8.8e-125
Smith-Waterman score: 2168; 100.0% identity (100.0% similar) in 330 aa overlap (1-330:1-330)
10 20 30 40 50 60
pF1KB7 MGKIDVDKILFFNQEIRLWQLIMATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 MGKIDVDKILFFNQEIRLWQLIMATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQAR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 HRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ASSLEEVKKEYASMYSGNDSFPQNGSSPWYLNFYKQTMDLLTGSGIITPQEAALPIVSAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 ASSLEEVKKEYASMYSGNDSFPQNGSSPWYLNFYKQTMDLLTGSGIITPQEAALPIVSAA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 ISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSLVS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 TPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLSCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 TPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLSCA
250 260 270 280 290 300
310 320 330
pF1KB7 NTQVKQEASFPVDEEMIMLQCTETFDDEDL
::::::::::::::::::::::::::::::
NP_872 NTQVKQEASFPVDEEMIMLQCTETFDDEDL
310 320 330
>>XP_011514441 (OMIM: 609987) PREDICTED: stimulated by r (379 aa)
initn: 1200 init1: 1200 opt: 1200 Z-score: 1309.0 bits: 250.7 E(85289): 3.6e-66
Smith-Waterman score: 1738; 80.4% identity (80.4% similar) in 362 aa overlap (40-330:18-379)
10 20 30 40 50 60
pF1KB7 LFFNQEIRLWQLIMATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQARHRATLAALF
::::::::::::::::::::::::::::::
XP_011 MATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQARHRATLAALF
10 20 30 40
70 80 90 100 110 120
pF1KB7 NNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGHASSLEEVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGHASSLEEVKK
50 60 70 80 90 100
130 140
pF1KB7 EYASMYSGNDS-----FPQNGSSPW-----------------------------------
::::::::::: :::::::::
XP_011 EYASMYSGNDSLLSNSFPQNGSSPWCPTEAVRKDAEEEEDEEEEDQEEEEEEEEEEEEEE
110 120 130 140 150 160
150 160 170
pF1KB7 -------------------------------YLNFYKQTMDLLTGSGIITPQEAALPIVS
:::::::::::::::::::::::::::::
XP_011 EEEEEEEEEEEKKVILYSPGTLSPDLMEFERYLNFYKQTMDLLTGSGIITPQEAALPIVS
170 180 190 200 210 220
180 190 200 210 220 230
pF1KB7 AAISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AAISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSL
230 240 250 260 270 280
240 250 260 270 280 290
pF1KB7 VSTPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSTPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLS
290 300 310 320 330 340
300 310 320 330
pF1KB7 CANTQVKQEASFPVDEEMIMLQCTETFDDEDL
::::::::::::::::::::::::::::::::
XP_011 CANTQVKQEASFPVDEEMIMLQCTETFDDEDL
350 360 370
>>XP_011514439 (OMIM: 609987) PREDICTED: stimulated by r (379 aa)
initn: 1200 init1: 1200 opt: 1200 Z-score: 1309.0 bits: 250.7 E(85289): 3.6e-66
Smith-Waterman score: 1738; 80.4% identity (80.4% similar) in 362 aa overlap (40-330:18-379)
10 20 30 40 50 60
pF1KB7 LFFNQEIRLWQLIMATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQARHRATLAALF
::::::::::::::::::::::::::::::
XP_011 MATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQARHRATLAALF
10 20 30 40
70 80 90 100 110 120
pF1KB7 NNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGHASSLEEVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGHASSLEEVKK
50 60 70 80 90 100
130 140
pF1KB7 EYASMYSGNDS-----FPQNGSSPW-----------------------------------
::::::::::: :::::::::
XP_011 EYASMYSGNDSLLSNSFPQNGSSPWCPTEAVRKDAEEEEDEEEEDQEEEEEEEEEEEEEE
110 120 130 140 150 160
150 160 170
pF1KB7 -------------------------------YLNFYKQTMDLLTGSGIITPQEAALPIVS
:::::::::::::::::::::::::::::
XP_011 EEEEEEEEEEEKKVILYSPGTLSPDLMEFERYLNFYKQTMDLLTGSGIITPQEAALPIVS
170 180 190 200 210 220
180 190 200 210 220 230
pF1KB7 AAISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AAISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSL
230 240 250 260 270 280
240 250 260 270 280 290
pF1KB7 VSTPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSTPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLS
290 300 310 320 330 340
300 310 320 330
pF1KB7 CANTQVKQEASFPVDEEMIMLQCTETFDDEDL
::::::::::::::::::::::::::::::::
XP_011 CANTQVKQEASFPVDEEMIMLQCTETFDDEDL
350 360 370
>>XP_011514440 (OMIM: 609987) PREDICTED: stimulated by r (379 aa)
initn: 1200 init1: 1200 opt: 1200 Z-score: 1309.0 bits: 250.7 E(85289): 3.6e-66
Smith-Waterman score: 1738; 80.4% identity (80.4% similar) in 362 aa overlap (40-330:18-379)
10 20 30 40 50 60
pF1KB7 LFFNQEIRLWQLIMATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQARHRATLAALF
::::::::::::::::::::::::::::::
XP_011 MATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQARHRATLAALF
10 20 30 40
70 80 90 100 110 120
pF1KB7 NNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGHASSLEEVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGHASSLEEVKK
50 60 70 80 90 100
130 140
pF1KB7 EYASMYSGNDS-----FPQNGSSPW-----------------------------------
::::::::::: :::::::::
XP_011 EYASMYSGNDSLLSNSFPQNGSSPWCPTEAVRKDAEEEEDEEEEDQEEEEEEEEEEEEEE
110 120 130 140 150 160
150 160 170
pF1KB7 -------------------------------YLNFYKQTMDLLTGSGIITPQEAALPIVS
:::::::::::::::::::::::::::::
XP_011 EEEEEEEEEEEKKVILYSPGTLSPDLMEFERYLNFYKQTMDLLTGSGIITPQEAALPIVS
170 180 190 200 210 220
180 190 200 210 220 230
pF1KB7 AAISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AAISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSL
230 240 250 260 270 280
240 250 260 270 280 290
pF1KB7 VSTPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSTPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLS
290 300 310 320 330 340
300 310 320 330
pF1KB7 CANTQVKQEASFPVDEEMIMLQCTETFDDEDL
::::::::::::::::::::::::::::::::
XP_011 CANTQVKQEASFPVDEEMIMLQCTETFDDEDL
350 360 370
>>XP_016867639 (OMIM: 609987) PREDICTED: stimulated by r (239 aa)
initn: 758 init1: 758 opt: 809 Z-score: 887.3 bits: 172.0 E(85289): 1.1e-42
Smith-Waterman score: 809; 96.2% identity (96.2% similar) in 132 aa overlap (23-149:1-132)
10 20 30 40 50 60
pF1KB7 MGKIDVDKILFFNQEIRLWQLIMATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQAR
::::::::::::::::::::::::::::::::::::::
XP_016 MATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQAR
10 20 30
70 80 90 100 110 120
pF1KB7 HRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGH
40 50 60 70 80 90
130 140 150 160 170
pF1KB7 ASSLEEVKKEYASMYSGNDS-----FPQNGSSPWYLNFYKQTMDLLTGSGIITPQEAALP
:::::::::::::::::::: :::::::::
XP_016 ASSLEEVKKEYASMYSGNDSLLSNSFPQNGSSPWCPTEAVRKDAEEEEDEEEEDQEEEEE
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB7 IVSAAISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGAS
XP_016 EEEEEEEEEEEEEEEEEEEEKKVILYSPGTLSPDLMEFERCEQLGGVALCTHGAPSHGEG
160 170 180 190 200 210
330 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 07:00:31 2016 done: Fri Nov 4 07:00:32 2016
Total Scan time: 7.610 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]