FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7376, 330 aa
  1>>>pF1KB7376 330 - 330 aa - 330 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5584+/-0.000839; mu= 15.9389+/- 0.051
 mean_var=84.8967+/-16.842, 0's: 0 Z-trim(108.6): 10  B-trim: 94 in 1/49
 Lambda= 0.139197
 statistics sampled from 10287 (10291) to 10287 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.316), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS5839.1 STRA8 gene_id:346673|Hs108|chr7         ( 330) 2168 444.9 4.1e-125


>>CCDS5839.1 STRA8 gene_id:346673|Hs108|chr7              (330 aa)
 initn: 2168 init1: 2168 opt: 2168  Z-score: 2359.7  bits: 444.9 E(32554): 4.1e-125
Smith-Waterman score: 2168; 100.0% identity (100.0% similar) in 330 aa overlap (1-330:1-330)

               10        20        30        40        50        60
pF1KB7 MGKIDVDKILFFNQEIRLWQLIMATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MGKIDVDKILFFNQEIRLWQLIMATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQAR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 HRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ASSLEEVKKEYASMYSGNDSFPQNGSSPWYLNFYKQTMDLLTGSGIITPQEAALPIVSAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ASSLEEVKKEYASMYSGNDSFPQNGSSPWYLNFYKQTMDLLTGSGIITPQEAALPIVSAA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSLVS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 TPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLSCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLSCA
              250       260       270       280       290       300

              310       320       330
pF1KB7 NTQVKQEASFPVDEEMIMLQCTETFDDEDL
       ::::::::::::::::::::::::::::::
CCDS58 NTQVKQEASFPVDEEMIMLQCTETFDDEDL
              310       320       330




330 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:00:30 2016 done: Fri Nov  4 07:00:30 2016
 Total Scan time:  1.960 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]