FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7372, 295 aa
  1>>>pF1KB7372 295 - 295 aa - 295 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3888+/-0.00105; mu= 15.4197+/- 0.063
 mean_var=77.5593+/-15.695, 0's: 0 Z-trim(104.5): 75  B-trim: 0 in 0/50
 Lambda= 0.145632
 statistics sampled from 7893 (7955) to 7893 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.244), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS8203.1 RNF121 gene_id:55298|Hs108|chr11        ( 327) 2034 437.0  9e-123
CCDS47149.1 RNF175 gene_id:285533|Hs108|chr4       ( 328) 1619 349.8 1.6e-96
CCDS73343.1 RNF121 gene_id:55298|Hs108|chr11       ( 205) 1191 259.7 1.3e-69


>>CCDS8203.1 RNF121 gene_id:55298|Hs108|chr11             (327 aa)
 initn: 2034 init1: 2034 opt: 2034  Z-score: 2317.6  bits: 437.0 E(32554): 9e-123
Smith-Waterman score: 2034; 100.0% identity (100.0% similar) in 294 aa overlap (2-295:34-327)

                                            10        20        30 
pF1KB7                              MRVEHARMHAKHRGHEAMHAEMVLILIATLV
                                     ::::::::::::::::::::::::::::::
CCDS82 VVEVEVGGGAAGERELDEVDMSDLSPEEQWRVEHARMHAKHRGHEAMHAEMVLILIATLV
            10        20        30        40        50        60   

              40        50        60        70        80        90 
pF1KB7 VAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWILFSAVTAFVTFRAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWILFSAVTAFVTFRAT
            70        80        90       100       110       120   

             100       110       120       130       140       150 
pF1KB7 RKPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RKPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLL
           130       140       150       160       170       180   

             160       170       180       190       200       210 
pF1KB7 FYGLYYGVLERDFAEMCADYMASTIGFYSESGMPTKHLSDSVCAVCGQQIFVDVSEEGII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FYGLYYGVLERDFAEMCADYMASTIGFYSESGMPTKHLSDSVCAVCGQQIFVDVSEEGII
           190       200       210       220       230       240   

             220       230       240       250       260       270 
pF1KB7 ENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWL
           250       260       270       280       290       300   

             280       290     
pF1KB7 RYLVAWQPVIIGVVQGINYILGLE
       ::::::::::::::::::::::::
CCDS82 RYLVAWQPVIIGVVQGINYILGLE
           310       320       

>>CCDS47149.1 RNF175 gene_id:285533|Hs108|chr4            (328 aa)
 initn: 1619 init1: 1619 opt: 1619  Z-score: 1846.4  bits: 349.8 E(32554): 1.6e-96
Smith-Waterman score: 1619; 73.4% identity (91.8% similar) in 293 aa overlap (3-295:36-328)

                                           10        20        30  
pF1KB7                             MRVEHARMHAKHRGHEAMHAEMVLILIATLVV
                                     ... ::.  ::::..::.::.::.. .::.
CCDS47 AARKAAPVLEAPPQQEQLSHTKLSAEDTWNLQQERMYKMHRGHDSMHVEMILIFLCVLVI
          10        20        30        40        50        60     

             40        50        60        70        80        90  
pF1KB7 AQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWILFSAVTAFVTFRATR
       ::..::::.::: ::::.:::.::::::::::.::.::::: .: .::..:... :::::
CCDS47 AQIVLVQWRQRHGRSYNLVTLLQMWVVPLYFTIKLYWWRFLSMWGMFSVITSYILFRATR
          70        80        90       100       110       120     

            100       110       120       130       140       150  
pF1KB7 KPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLLF
       :::   ::::::::::::::.::: :.:::.:.:::. :.::.:::: .:.:::::  ::
CCDS47 KPLSGRTPRLVYKWFLLIYKLSYAFGVVGYLAIMFTMCGFNLFFKIKARDSMDFGIVSLF
         130       140       150       160       170       180     

            160       170       180       190       200       210  
pF1KB7 YGLYYGVLERDFAEMCADYMASTIGFYSESGMPTKHLSDSVCAVCGQQIFVDVSEEGIIE
       :::::::. :::::.:.::::::::::: : .::. :::..::::::.:.:...:::.::
CCDS47 YGLYYGVMGRDFAEICSDYMASTIGFYSVSRLPTRSLSDNICAVCGQKIIVELDEEGLIE
         190       200       210       220       230       240     

            220       230       240       250       260       270  
pF1KB7 NTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLR
       :::.::::::::::::::::::::::::::::::::::::.:::::: : .:::.:::::
CCDS47 NTYQLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMISNPWERTHFLYGQILDWLR
         250       260       270       280       290       300     

            280       290     
pF1KB7 YLVAWQPVIIGVVQGINYILGLE
       ::::::::.::.:::: : ::::
CCDS47 YLVAWQPVVIGIVQGIIYSLGLE
         310       320        

>>CCDS73343.1 RNF121 gene_id:55298|Hs108|chr11            (205 aa)
 initn: 1188 init1: 1188 opt: 1191  Z-score: 1363.3  bits: 259.7 E(32554): 1.3e-69
Smith-Waterman score: 1191; 98.4% identity (98.4% similar) in 182 aa overlap (1-182:1-182)

               10        20        30        40        50        60
pF1KB7 MRVEHARMHAKHRGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MRVEHARMHAKHRGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LYFTVKLHWWRFLVIWILFSAVTAFVTFRATRKPLVQTTPRLVYKWFLLIYKISYATGIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LYFTVKLHWWRFLVIWILFSAVTAFVTFRATRKPLVQTTPRLVYKWFLLIYKISYATGIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GYMAVMFTLFGLNLLFKIKPEDAMDFGISLLFYGLYYGVLERDFAEMCADYMASTIGFYS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::  :
CCDS73 GYMAVMFTLFGLNLLFKIKPEDAMDFGISLLFYGLYYGVLERDFAEMCADYMASTIGRCS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ESGMPTKHLSDSVCAVCGQQIFVDVSEEGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTC
        :                                                          
CCDS73 ASTSSASVAGASWERSKRVPTAKRR                                   
              190       200                                        




295 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:57:43 2016 done: Fri Nov  4 06:57:43 2016
 Total Scan time:  2.260 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]