Result of FASTA (ccds) for
pF1KB7370
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7370, 197 aa
1>>>pF1KB7370 197 - 197 aa - 197 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0523+/-0.000736; mu= 14.9408+/- 0.044
mean_var=62.9893+/-12.541, 0's: 0 Z-trim(108.1): 26 B-trim: 0 in 0/51
Lambda= 0.161600
statistics sampled from 9964 (9988) to 9964 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.307), width: 16
Scan time: 1.910
The best scores are: opt bits E(32554)
CCDS31661.1 CARD16 gene_id:114769|Hs108|chr11 ( 197) 1317 315.1 1.7e-86
CCDS8329.1 CASP1 gene_id:834|Hs108|chr11 ( 383) 741 181.0 8e-46
CCDS41705.1 CARD16 gene_id:114769|Hs108|chr11 ( 97) 576 142.2 9.9e-35
CCDS8330.1 CASP1 gene_id:834|Hs108|chr11 ( 404) 552 137.0 1.5e-32
CCDS31662.1 CARD17 gene_id:440068|Hs108|chr11 ( 110) 464 116.1 7.9e-27
CCDS53705.1 CARD18 gene_id:59082|Hs108|chr11 ( 90) 329 84.6 2e-17
>>CCDS31661.1 CARD16 gene_id:114769|Hs108|chr11 (197 aa)
initn: 1317 init1: 1317 opt: 1317 Z-score: 1666.2 bits: 315.1 E(32554): 1.7e-86
Smith-Waterman score: 1317; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)
10 20 30 40 50 60
pF1KB7 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VIPKGAQACQICITYICEEDSYLAETLGLSAALQAVQDNPAMPTCSSPEGRIKLCFLEDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VIPKGAQACQICITYICEEDSYLAETLGLSAALQAVQDNPAMPTCSSPEGRIKLCFLEDA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QRIWKQKLQRCHVQNTIIKWSERYTSGSFEMQWLFLRTNFIERFWRNILLLPLHKGSLYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QRIWKQKLQRCHVQNTIIKWSERYTSGSFEMQWLFLRTNFIERFWRNILLLPLHKGSLYP
130 140 150 160 170 180
190
pF1KB7 RIPGLGKELQTGTHKLS
:::::::::::::::::
CCDS31 RIPGLGKELQTGTHKLS
190
>>CCDS8329.1 CASP1 gene_id:834|Hs108|chr11 (383 aa)
initn: 741 init1: 741 opt: 741 Z-score: 936.2 bits: 181.0 E(32554): 8e-46
Smith-Waterman score: 741; 91.3% identity (95.3% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KB7 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
::::::::::::::.:::::::::::::::::::::.:::::::::::::::::::::::
CCDS83 MADKVLKEKRKLFIRSMGEGTINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VIPKGAQACQICITYICEEDSYLAETLGLSAALQAVQDNPAMPTCSSPEGRIKLCFLEDA
:::::::::::::::::::::::: ::::::: ::::::::::: :. :: .::: ::.:
CCDS83 VIPKGAQACQICITYICEEDSYLAGTLGLSAAPQAVQDNPAMPTSSGSEGNVKLCSLEEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QRIWKQKLQRCHVQNTIIKWSERYTSGSFEMQWLFLRTNFIERFWRNILLLPLHKGSLYP
:::::::
CCDS83 QRIWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD
130 140 150 160 170 180
>>CCDS41705.1 CARD16 gene_id:114769|Hs108|chr11 (97 aa)
initn: 576 init1: 576 opt: 576 Z-score: 737.0 bits: 142.2 E(32554): 9.9e-35
Smith-Waterman score: 576; 100.0% identity (100.0% similar) in 91 aa overlap (1-91:1-91)
10 20 30 40 50 60
pF1KB7 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VIPKGAQACQICITYICEEDSYLAETLGLSAALQAVQDNPAMPTCSSPEGRIKLCFLEDA
:::::::::::::::::::::::::::::::
CCDS41 VIPKGAQACQICITYICEEDSYLAETLGLSAGPIPGN
70 80 90
130 140 150 160 170 180
pF1KB7 QRIWKQKLQRCHVQNTIIKWSERYTSGSFEMQWLFLRTNFIERFWRNILLLPLHKGSLYP
>>CCDS8330.1 CASP1 gene_id:834|Hs108|chr11 (404 aa)
initn: 727 init1: 552 opt: 552 Z-score: 697.7 bits: 137.0 E(32554): 1.5e-32
Smith-Waterman score: 689; 78.4% identity (81.8% similar) in 148 aa overlap (1-127:1-148)
10 20 30 40 50 60
pF1KB7 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
::::::::::::::.:::::::::::::::::::::.:::::::::::::::::::::::
CCDS83 MADKVLKEKRKLFIRSMGEGTINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDS
10 20 30 40 50 60
70 80 90
pF1KB7 VIPKGAQACQICITYICEEDSYLAETLGLSA---------------------ALQAVQDN
:::::::::::::::::::::::: :::::: : ::::::
CCDS83 VIPKGAQACQICITYICEEDSYLAGTLGLSADQTSGNYLNMQDSQGVLSSFPAPQAVQDN
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 PAMPTCSSPEGRIKLCFLEDAQRIWKQKLQRCHVQNTIIKWSERYTSGSFEMQWLFLRTN
::::: :. :: .::: ::.::::::::
CCDS83 PAMPTSSGSEGNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPRRT
130 140 150 160 170 180
>>CCDS31662.1 CARD17 gene_id:440068|Hs108|chr11 (110 aa)
initn: 464 init1: 464 opt: 464 Z-score: 595.1 bits: 116.1 E(32554): 7.9e-27
Smith-Waterman score: 464; 83.5% identity (92.3% similar) in 91 aa overlap (1-91:1-91)
10 20 30 40 50 60
pF1KB7 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
::::::::::: ::.:.::::::::: :::.::::.:::.: :: ::::::::.:::.::
CCDS31 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VIPKGAQACQICITYICEEDSYLAETLGLSAALQAVQDNPAMPTCSSPEGRIKLCFLEDA
:: ::: ::::::::::::::.:: ::::::
CCDS31 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS
70 80 90 100 110
130 140 150 160 170 180
pF1KB7 QRIWKQKLQRCHVQNTIIKWSERYTSGSFEMQWLFLRTNFIERFWRNILLLPLHKGSLYP
>>CCDS53705.1 CARD18 gene_id:59082|Hs108|chr11 (90 aa)
initn: 329 init1: 329 opt: 329 Z-score: 426.3 bits: 84.6 E(32554): 2e-17
Smith-Waterman score: 329; 56.2% identity (80.9% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KB7 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
:::..:..::..::::.: ::::.::: ::. .:..::.:.::. :: :::::.:.:::
CCDS53 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VIPKGAQACQICITYICEEDSYLAETLGLSAALQAVQDNPAMPTCSSPEGRIKLCFLEDA
: :: ..: : ..:::: :: .::
CCDS53 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH
70 80 90
197 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 06:55:44 2016 done: Fri Nov 4 06:55:44 2016
Total Scan time: 1.910 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]