Result of FASTA (omim) for
pF1KB7367
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7367, 161 aa
1>>>pF1KB7367 161 - 161 aa - 161 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7227+/-0.000251; mu= 16.0428+/- 0.016
mean_var=66.3464+/-13.645, 0's: 0 Z-trim(121.5): 16 B-trim: 1122 in 1/50
Lambda= 0.157458
statistics sampled from 38267 (38283) to 38267 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.449), width: 16
Scan time: 5.970
The best scores are: opt bits E(85289)
NP_835145 (OMIM: 615823) structure-specific endonu ( 161) 1171 273.6 9.9e-74
NP_001015000 (OMIM: 615822) structure-specific end ( 161) 1171 273.6 9.9e-74
NP_001014999 (OMIM: 615822) structure-specific end ( 275) 609 146.1 4e-35
NP_076949 (OMIM: 615823) structure-specific endonu ( 275) 609 146.1 4e-35
>>NP_835145 (OMIM: 615823) structure-specific endonuclea (161 aa)
initn: 1171 init1: 1171 opt: 1171 Z-score: 1444.7 bits: 273.6 E(85289): 9.9e-74
Smith-Waterman score: 1171; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KB7 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ
70 80 90 100 110 120
130 140 150 160
pF1KB7 CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
:::::::::::::::::::::::::::::::::::::::::
NP_835 CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
130 140 150 160
>>NP_001015000 (OMIM: 615822) structure-specific endonuc (161 aa)
initn: 1171 init1: 1171 opt: 1171 Z-score: 1444.7 bits: 273.6 E(85289): 9.9e-74
Smith-Waterman score: 1171; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KB7 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ
70 80 90 100 110 120
130 140 150 160
pF1KB7 CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
:::::::::::::::::::::::::::::::::::::::::
NP_001 CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
130 140 150 160
>>NP_001014999 (OMIM: 615822) structure-specific endonuc (275 aa)
initn: 609 init1: 609 opt: 609 Z-score: 751.7 bits: 146.1 E(85289): 4e-35
Smith-Waterman score: 609; 97.6% identity (100.0% similar) in 83 aa overlap (79-161:193-275)
50 60 70 80 90 100
pF1KB7 RKKGGAWRTSGRGPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQ
..::::::::::::::::::::::::::::
NP_001 PRRRAGPFDDAEPEPDQGDPGACCSLCAQTIQDEEGPLCCPHPGCLLRAHVICLAEEFLQ
170 180 190 200 210 220
110 120 130 140 150 160
pF1KB7 EEPGQLLPLEGQCPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEPGQLLPLEGQCPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
230 240 250 260 270
>--
initn: 583 init1: 565 opt: 569 Z-score: 702.5 bits: 137.0 E(85289): 2.2e-32
Smith-Waterman score: 569; 87.9% identity (88.9% similar) in 99 aa overlap (1-99:1-97)
10 20 30 40 50 60
pF1KB7 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ
:::::::::::::::::::: : :: . : :::
NP_001 GPWEMVLVVHGFPSSVAALR-FEWAWQHPHASRRL-AHVGPRLRGETAFAFHLRVLAHML
70 80 90 100 110
130 140 150 160
pF1KB7 CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
NP_001 RAPPWARLPLTLRWVRPDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPD
120 130 140 150 160 170
>>NP_076949 (OMIM: 615823) structure-specific endonuclea (275 aa)
initn: 609 init1: 609 opt: 609 Z-score: 751.7 bits: 146.1 E(85289): 4e-35
Smith-Waterman score: 609; 97.6% identity (100.0% similar) in 83 aa overlap (79-161:193-275)
50 60 70 80 90 100
pF1KB7 RKKGGAWRTSGRGPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQ
..::::::::::::::::::::::::::::
NP_076 PRRRAGPFDDAEPEPDQGDPGACCSLCAQTIQDEEGPLCCPHPGCLLRAHVICLAEEFLQ
170 180 190 200 210 220
110 120 130 140 150 160
pF1KB7 EEPGQLLPLEGQCPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 EEPGQLLPLEGQCPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
230 240 250 260 270
>--
initn: 583 init1: 565 opt: 569 Z-score: 702.5 bits: 137.0 E(85289): 2.2e-32
Smith-Waterman score: 569; 87.9% identity (88.9% similar) in 99 aa overlap (1-99:1-97)
10 20 30 40 50 60
pF1KB7 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ
:::::::::::::::::::: : :: . : :::
NP_076 GPWEMVLVVHGFPSSVAALR-FEWAWQHPHASRRL-AHVGPRLRGETAFAFHLRVLAHML
70 80 90 100 110
130 140 150 160
pF1KB7 CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
NP_076 RAPPWARLPLTLRWVRPDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPD
120 130 140 150 160 170
161 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 06:54:02 2016 done: Fri Nov 4 06:54:02 2016
Total Scan time: 5.970 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]