FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7366, 245 aa
  1>>>pF1KB7366 245 - 245 aa - 245 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0318+/-0.000741; mu= 16.8462+/- 0.044
 mean_var=76.0270+/-15.152, 0's: 0 Z-trim(109.9): 16  B-trim: 184 in 2/49
 Lambda= 0.147092
 statistics sampled from 11225 (11235) to 11225 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.345), width:  16
 Scan time:  2.230

The best scores are:                                      opt bits E(32554)
CCDS73344.1 FOLR3 gene_id:2352|Hs108|chr11         ( 245) 1805 391.8 2.2e-109
CCDS8212.1 FOLR2 gene_id:2350|Hs108|chr11          ( 255) 1486 324.2 5.4e-89
CCDS8211.1 FOLR1 gene_id:2348|Hs108|chr11          ( 257) 1368 299.1 1.9e-81
CCDS81615.1 IZUMO1R gene_id:390243|Hs108|chr11     ( 250) 1007 222.5 2.1e-58


>>CCDS73344.1 FOLR3 gene_id:2352|Hs108|chr11              (245 aa)
 initn: 1805 init1: 1805 opt: 1805  Z-score: 2077.3  bits: 391.8 E(32554): 2.2e-109
Smith-Waterman score: 1805; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KB7 MDMAWQMMQLLLLALVTAAGSAQPRSARARTDLLNVCMNAKHHKTQPSPEDELYGQCSPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MDMAWQMMQLLLLALVTAAGSAQPRSARARTDLLNVCMNAKHHKTQPSPEDELYGQCSPW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KKNACCTASTSQELHKDTSRLYNFNWDHCGKMEPTCKRHFIQDSCLYECSPNLGPWIRQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KKNACCTASTSQELHKDTSRLYNFNWDHCGKMEPTCKRHFIQDSCLYECSPNLGPWIRQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NQSWRKERILNVPLCKEDCERWWEDCRTSYTCKSNWHKGWNWTSGINECPAGALCSTFES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NQSWRKERILNVPLCKEDCERWWEDCRTSYTCKSNWHKGWNWTSGINECPAGALCSTFES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 YFPTPAALCEGLWSHSFKVSNYSRGSGRCIQMWFDSAQGNPNEEVAKFYAAAMNAGAPSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YFPTPAALCEGLWSHSFKVSNYSRGSGRCIQMWFDSAQGNPNEEVAKFYAAAMNAGAPSR
              190       200       210       220       230       240

            
pF1KB7 GIIDS
       :::::
CCDS73 GIIDS
            

>>CCDS8212.1 FOLR2 gene_id:2350|Hs108|chr11               (255 aa)
 initn: 1485 init1: 1455 opt: 1486  Z-score: 1711.3  bits: 324.2 E(32554): 5.4e-89
Smith-Waterman score: 1486; 82.6% identity (92.5% similar) in 241 aa overlap (3-241:1-237)

               10        20        30        40        50        60
pF1KB7 MDMAWQMMQLLLLALVTAAGSAQPRSARARTDLLNVCMNAKHHKTQPSPEDELYGQCSPW
         :.:. : :::: :: .:      ::. :::::::::.::::::.:.:::.:. :::::
CCDS82   MVWKWMPLLLL-LVCVATMC---SAQDRTDLLNVCMDAKHHKTKPGPEDKLHDQCSPW
                 10            20        30        40        50    

               70        80        90       100       110       120
pF1KB7 KKNACCTASTSQELHKDTSRLYNFNWDHCGKMEPTCKRHFIQDSCLYECSPNLGPWIRQV
       ::::::::::::::::::::::::::::::::::.::::::::.:::::::::::::.::
CCDS82 KKNACCTASTSQELHKDTSRLYNFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQQV
           60        70        80        90       100       110    

              130       140       150       160       170       180
pF1KB7 NQSWRKERILNVPLCKEDCERWWEDCRTSYTCKSNWHKGWNWTSGINECPAGALCSTFES
       ::::::::.:.::::::::.::::::.::.:::::::.::.::::.:.::::::: ::::
CCDS82 NQSWRKERFLDVPLCKEDCQRWWEDCHTSHTCKSNWHRGWDWTSGVNKCPAGALCRTFES
          120       130       140       150       160       170    

              190       200       210       220       230          
pF1KB7 YFPTPAALCEGLWSHSFKVSNYSRGSGRCIQMWFDSAQGNPNEEVAKFYAAAM--NAGAP
       ::::::::::::::::.:::::::::::::::::::::::::::::.::::::  :::  
CCDS82 YFPTPAALCEGLWSHSYKVSNYSRGSGRCIQMWFDSAQGNPNEEVARFYAAAMHVNAGEM
          180       190       200       210       220       230    

      240                   
pF1KB7 SRGIIDS              
        .:                  
CCDS82 LHGTGGLLLSLALMLQLWLLG
          240       250     

>>CCDS8211.1 FOLR1 gene_id:2348|Hs108|chr11               (257 aa)
 initn: 1409 init1: 1365 opt: 1368  Z-score: 1575.9  bits: 299.1 E(32554): 1.9e-81
Smith-Waterman score: 1368; 74.4% identity (89.5% similar) in 238 aa overlap (3-238:1-238)

               10          20        30        40        50        
pF1KB7 MDMAWQMMQLLLLALVTAA--GSAQPRSARARTDLLNVCMNAKHHKTQPSPEDELYGQCS
         :: .:   ::: :: .:  : :: : : :::.:::::::::::: .:.:::.:. :: 
CCDS82   MAQRMTTQLLLLLVWVAVVGEAQTRIAWARTELLNVCMNAKHHKEKPGPEDKLHEQCR
                 10        20        30        40        50        

       60        70        80        90       100       110        
pF1KB7 PWKKNACCTASTSQELHKDTSRLYNFNWDHCGKMEPTCKRHFIQDSCLYECSPNLGPWIR
       ::.:::::...:::: :::.: :: :::.:::.: :.::::::::.:::::::::::::.
CCDS82 PWRKNACCSTNTSQEAHKDVSYLYRFNWNHCGEMAPACKRHFIQDTCLYECSPNLGPWIQ
       60        70        80        90       100       110        

      120       130       140       150       160       170        
pF1KB7 QVNQSWRKERILNVPLCKEDCERWWEDCRTSYTCKSNWHKGWNWTSGINECPAGALCSTF
       ::.:::::::.:::::::::::.::::::::::::::::::::::::.:.: .:: :. :
CCDS82 QVDQSWRKERVLNVPLCKEDCEQWWEDCRTSYTCKSNWHKGWNWTSGFNKCAVGAACQPF
      120       130       140       150       160       170        

      180       190       200       210       220       230        
pF1KB7 ESYFPTPAALCEGLWSHSFKVSNYSRGSGRCIQMWFDSAQGNPNEEVAKFYAAAMNAGAP
       . :::::..::. .:.::.:::::::::::::::::: ::::::::::.::::::....:
CCDS82 HFYFPTPTVLCNEIWTHSYKVSNYSRGSGRCIQMWFDPAQGNPNEEVARFYAAAMSGAGP
      180       190       200       210       220       230        

      240                 
pF1KB7 SRGIIDS            
                          
CCDS82 WAAWPFLLSLALMLLWLLS
      240       250       

>>CCDS81615.1 IZUMO1R gene_id:390243|Hs108|chr11          (250 aa)
 initn: 1010 init1: 561 opt: 1007  Z-score: 1162.0  bits: 222.5 E(32554): 2.1e-58
Smith-Waterman score: 1007; 56.2% identity (72.7% similar) in 242 aa overlap (5-239:5-232)

               10        20        30        40        50        60
pF1KB7 MDMAWQMMQLLLLALVTAAGSAQPRSARARTDLLNVCMNAKHHKTQPSPEDELYGQCSPW
           : ..  :  .. : ::.          .:::.::::::::  :::::.:: .: ::
CCDS81 MACWWPLLLELWTVMPTWAGD----------ELLNICMNAKHHKRVPSPEDKLYEECIPW
               10        20                  30        40        50

               70        80        90       100       110       120
pF1KB7 KKNACCTASTSQELHKDTSRLYNFNWDHCGKMEPTCKRHFIQDSCLYECSPNLGPWIRQV
       : ::::: .:: : : :.: ::::.  ::: . : :..::::  :.:::::::::::. :
CCDS81 KDNACCTLTTSWEAHLDVSPLYNFSLFHCGLLMPGCRKHFIQAICFYECSPNLGPWIQPV
               60        70        80        90       100       110

                     130       140       150       160       170   
pF1KB7 NQ-SW------RKERILNVPLCKEDCERWWEDCRTSYTCKSNWHKGWNWTSGINECPAGA
       .. .:      . ::..:::::.::::.:::::: ::::::::. ::.:..: :.:: ::
CCDS81 GSLGWEVAPSGQGERVVNVPLCQEDCEEWWEDCRMSYTCKSNWRGGWDWSQGKNRCPKGA
              120       130       140       150       160       170

           180       190       200       210       220       230   
pF1KB7 LCSTFESYFPTPAALCEGLWSHSFKVSNYSRGSGRCIQMWFDSAQGNPNEEVAKFYAAAM
        :  :  :::::: :::  ::.:::.:   :.::::.: ::. ::::::  ::...:.. 
CCDS81 QCLPFSHYFPTPADLCEKTWSNSFKASPERRNSGRCLQKWFEPAQGNPNVAVARLFASS-
              180       190       200       210       220          

           240                 
pF1KB7 NAGAPSRGIIDS            
          :::                  
CCDS81 ---APSWELSYTIMVCSLFLPFLS
        230       240       250




245 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:53:28 2016 done: Fri Nov  4 06:53:28 2016
 Total Scan time:  2.230 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]