FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7362, 252 aa
  1>>>pF1KB7362 252 - 252 aa - 252 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4632+/-0.000679; mu= 14.0057+/- 0.041
 mean_var=69.7859+/-13.595, 0's: 0 Z-trim(109.7): 7  B-trim: 2 in 1/52
 Lambda= 0.153529
 statistics sampled from 11103 (11107) to 11103 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.341), width:  16
 Scan time:  2.430

The best scores are:                                      opt bits E(32554)
CCDS2532.1 COPS9 gene_id:150678|Hs108|chr2         ( 252) 1698 384.6 3.4e-107


>>CCDS2532.1 COPS9 gene_id:150678|Hs108|chr2              (252 aa)
 initn: 1698 init1: 1698 opt: 1698  Z-score: 2038.1  bits: 384.6 E(32554): 3.4e-107
Smith-Waterman score: 1698; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)

               10        20        30        40        50        60
pF1KB7 MWRAPEAALRPEVSLERRGPEMKPAVDEMFPEGAGPYVDLDEVARARRESPSAGGSTGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MWRAPEAALRPEVSLERRGPEMKPAVDEMFPEGAGPYVDLDEVARARRESPSAGGSTGLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 MDLAANEKAVHADFFNDFEDLFDDDDIHSSGLPRTSQQSSMVPALQRGQSEHGVRGKAAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MDLAANEKAVHADFFNDFEDLFDDDDIHSSGLPRTSQQSSMVPALQRGQSEHGVRGKAAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RPVVSEERCELNGREVAALDRAFGSTGHGQGAEALMFTRCREHPLCGTNKATSEGKMGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 RPVVSEERCELNGREVAALDRAFGSTGHGQGAEALMFTRCREHPLCGTNKATSEGKMGTG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 RLRNSLRKNQSKWLGSYLEVLRTTRSRREVSEDSTISVSTHWRGKCFKSDETPSVAGGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 RLRNSLRKNQSKWLGSYLEVLRTTRSRREVSEDSTISVSTHWRGKCFKSDETPSVAGGEE
              190       200       210       220       230       240

              250  
pF1KB7 GKKTTQPCIDVR
       ::::::::::::
CCDS25 GKKTTQPCIDVR
              250  




252 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:51:41 2016 done: Fri Nov  4 06:51:41 2016
 Total Scan time:  2.430 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]