Result of FASTA (omim) for
pF1KB7359
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7359, 339 aa
1>>>pF1KB7359 339 - 339 aa - 339 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5895+/-0.000399; mu= 15.4914+/- 0.024
mean_var=102.4592+/-22.230, 0's: 0 Z-trim(112.2): 222 B-trim: 0 in 0/53
Lambda= 0.126706
statistics sampled from 20814 (21047) to 20814 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.247), width: 16
Scan time: 6.400
The best scores are: opt bits E(85289)
XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 733 145.3 4.9e-34
XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 733 145.3 4.9e-34
NP_001269978 (OMIM: 603158) ubiquitin carboxyl-ter (1012) 733 145.3 5.2e-34
XP_016878207 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 733 145.4 5.5e-34
XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 733 145.4 5.5e-34
XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 733 145.4 5.5e-34
XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 733 145.4 5.5e-34
XP_006720824 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 733 145.4 5.6e-34
NP_005145 (OMIM: 603158) ubiquitin carboxyl-termin (1118) 733 145.4 5.6e-34
XP_011520495 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 733 145.4 5.6e-34
NP_001122082 (OMIM: 603158) ubiquitin carboxyl-ter (1118) 733 145.4 5.6e-34
NP_001230688 (OMIM: 604725) ubiquitin carboxyl-ter ( 362) 428 89.1 1.5e-17
XP_016874028 (OMIM: 604725) PREDICTED: ubiquitin c ( 352) 421 87.9 3.6e-17
NP_741994 (OMIM: 604725) ubiquitin carboxyl-termin ( 396) 421 87.9 4e-17
NP_004196 (OMIM: 604725) ubiquitin carboxyl-termin ( 605) 421 88.1 5.3e-17
XP_005271778 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 421 88.1 5.3e-17
XP_005271779 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 421 88.1 5.3e-17
XP_006719781 (OMIM: 604731) PREDICTED: ubiquitin c ( 775) 351 75.4 4.5e-13
NP_006304 (OMIM: 604731) ubiquitin carboxyl-termin ( 952) 352 75.7 4.6e-13
XP_016875773 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 351 75.4 4.9e-13
XP_016875774 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 351 75.4 4.9e-13
NP_001239007 (OMIM: 604731) ubiquitin carboxyl-ter ( 981) 351 75.5 5.4e-13
NP_036607 (OMIM: 604729) ubiquitin carboxyl-termin ( 565) 340 73.2 1.5e-12
NP_001014443 (OMIM: 604729) ubiquitin carboxyl-ter ( 565) 340 73.2 1.5e-12
XP_016856529 (OMIM: 604729) PREDICTED: ubiquitin c ( 594) 340 73.3 1.5e-12
NP_001306776 (OMIM: 604729) ubiquitin carboxyl-ter ( 594) 340 73.3 1.5e-12
XP_016864046 (OMIM: 612849) PREDICTED: ubiquitin c ( 341) 336 72.3 1.7e-12
NP_001127695 (OMIM: 612849) ubiquitin carboxyl-ter ( 359) 336 72.3 1.8e-12
NP_073743 (OMIM: 612849) ubiquitin carboxyl-termin ( 366) 336 72.3 1.8e-12
NP_955475 (OMIM: 603486) ubiquitin carboxyl-termin ( 916) 334 72.4 4.4e-12
NP_003354 (OMIM: 603486) ubiquitin carboxyl-termin ( 963) 334 72.4 4.6e-12
XP_011522361 (OMIM: 604334) PREDICTED: ubiquitin c ( 786) 319 69.5 2.6e-11
XP_011522360 (OMIM: 604334) PREDICTED: ubiquitin c (1031) 319 69.7 3.2e-11
XP_016880723 (OMIM: 607740) PREDICTED: ubiquitin c (1288) 319 69.8 3.7e-11
XP_011523681 (OMIM: 607740) PREDICTED: ubiquitin c (1327) 319 69.8 3.8e-11
XP_011522359 (OMIM: 604334) PREDICTED: ubiquitin c (1384) 319 69.8 3.9e-11
XP_011522358 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 319 69.8 4e-11
XP_011522353 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 319 69.8 4e-11
XP_016880779 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 319 69.8 4e-11
XP_011522354 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 319 69.8 4e-11
XP_011522356 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 319 69.8 4e-11
XP_011522355 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 319 69.8 4e-11
XP_011522357 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 319 69.8 4e-11
XP_011522352 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 319 69.8 4e-11
NP_001291213 (OMIM: 604334) ubiquitin carboxyl-ter (1406) 319 69.8 4e-11
NP_004496 (OMIM: 604334) ubiquitin carboxyl-termin (1406) 319 69.8 4e-11
XP_016880722 (OMIM: 607740) PREDICTED: ubiquitin c (1558) 319 69.8 4.3e-11
XP_011523680 (OMIM: 607740) PREDICTED: ubiquitin c (1572) 319 69.8 4.3e-11
XP_011523678 (OMIM: 607740) PREDICTED: ubiquitin c (1601) 319 69.8 4.4e-11
NP_115971 (OMIM: 607740) ubiquitin carboxyl-termin (1604) 319 69.8 4.4e-11
>>XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa)
initn: 739 init1: 493 opt: 733 Z-score: 732.0 bits: 145.3 E(85289): 4.9e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:577-888)
10 20 30 40 50 60
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
: : : .::: :::::: .:.: ::::
XP_016 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
550 560 570 580 590 600
70 80 90 100 110 120
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
. :..:: . : ... : . .::: :. .: .: :. .::. : ..:.
XP_016 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
610 620 630 640 650 660
130 140 150 160 170
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
. :. :::.::.:. ... ::: :.: .: . :.. .... .:
XP_016 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
670 680 690 700 710 720
180 190 200 210 220 230
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
. :::. ::. :.. .. :: :.: . :.: .:::. : .:.:.:::. : ...
XP_016 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
730 740 750 760 770 780
240 250 260 270 280 290
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
:: ::...:: :...... . : : : ... :::::. .: :.::.:.. .:: :::
XP_016 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
790 800 810 820 830 840
300 310 320 330
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA
:. :. . . :::: .: ::.: ::::::::.:::.. :
XP_016 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
850 860 870 880 890 900
XP_016 KSSAAYILFYTSLGPRVTDVAT
910 920
>>XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa)
initn: 739 init1: 493 opt: 733 Z-score: 732.0 bits: 145.3 E(85289): 4.9e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:577-888)
10 20 30 40 50 60
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
: : : .::: :::::: .:.: ::::
XP_016 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
550 560 570 580 590 600
70 80 90 100 110 120
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
. :..:: . : ... : . .::: :. .: .: :. .::. : ..:.
XP_016 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
610 620 630 640 650 660
130 140 150 160 170
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
. :. :::.::.:. ... ::: :.: .: . :.. .... .:
XP_016 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
670 680 690 700 710 720
180 190 200 210 220 230
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
. :::. ::. :.. .. :: :.: . :.: .:::. : .:.:.:::. : ...
XP_016 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
730 740 750 760 770 780
240 250 260 270 280 290
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
:: ::...:: :...... . : : : ... :::::. .: :.::.:.. .:: :::
XP_016 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
790 800 810 820 830 840
300 310 320 330
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA
:. :. . . :::: .: ::.: ::::::::.:::.. :
XP_016 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
850 860 870 880 890 900
XP_016 KSSAAYILFYTSLGPRVTDVAT
910 920
>>NP_001269978 (OMIM: 603158) ubiquitin carboxyl-termina (1012 aa)
initn: 739 init1: 493 opt: 733 Z-score: 731.5 bits: 145.3 E(85289): 5.2e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:661-972)
10 20 30 40 50 60
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
: : : .::: :::::: .:.: ::::
NP_001 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
640 650 660 670 680 690
70 80 90 100 110 120
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
. :..:: . : ... : . .::: :. .: .: :. .::. : ..:.
NP_001 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
700 710 720 730 740 750
130 140 150 160 170
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
. :. :::.::.:. ... ::: :.: .: . :.. .... .:
NP_001 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
760 770 780 790 800 810
180 190 200 210 220 230
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
. :::. ::. :.. .. :: :.: . :.: .:::. : .:.:.:::. : ...
NP_001 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
820 830 840 850 860 870
240 250 260 270 280 290
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
:: ::...:: :...... . : : : ... :::::. .: :.::.:.. .:: :::
NP_001 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
880 890 900 910 920 930
300 310 320 330
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA
:. :. . . :::: .: ::.: ::::::::.:::.. :
NP_001 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
940 950 960 970 980 990
NP_001 KSSAAYILFYTSLGPRVTDVAT
1000 1010
>>XP_016878207 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa)
initn: 739 init1: 493 opt: 733 Z-score: 731.1 bits: 145.4 E(85289): 5.5e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:738-1049)
10 20 30 40 50 60
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
: : : .::: :::::: .:.: ::::
XP_016 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
710 720 730 740 750 760
70 80 90 100 110 120
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
. :..:: . : ... : . .::: :. .: .: :. .::. : ..:.
XP_016 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
770 780 790 800 810 820
130 140 150 160 170
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
. :. :::.::.:. ... ::: :.: .: . :.. .... .:
XP_016 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
830 840 850 860 870 880
180 190 200 210 220 230
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
. :::. ::. :.. .. :: :.: . :.: .:::. : .:.:.:::. : ...
XP_016 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
890 900 910 920 930 940
240 250 260 270 280 290
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
:: ::...:: :...... . : : : ... :::::. .: :.::.:.. .:: :::
XP_016 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
950 960 970 980 990 1000
300 310 320 330
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA
:. :. . . :::: .: ::.: ::::::::.:::.. :
XP_016 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
1010 1020 1030 1040 1050 1060
XP_016 KSSAAYILFYTSLGPRVTDVAT
1070 1080
>>XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa)
initn: 739 init1: 493 opt: 733 Z-score: 731.1 bits: 145.4 E(85289): 5.5e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:738-1049)
10 20 30 40 50 60
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
: : : .::: :::::: .:.: ::::
XP_006 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
710 720 730 740 750 760
70 80 90 100 110 120
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
. :..:: . : ... : . .::: :. .: .: :. .::. : ..:.
XP_006 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
770 780 790 800 810 820
130 140 150 160 170
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
. :. :::.::.:. ... ::: :.: .: . :.. .... .:
XP_006 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
830 840 850 860 870 880
180 190 200 210 220 230
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
. :::. ::. :.. .. :: :.: . :.: .:::. : .:.:.:::. : ...
XP_006 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
890 900 910 920 930 940
240 250 260 270 280 290
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
:: ::...:: :...... . : : : ... :::::. .: :.::.:.. .:: :::
XP_006 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
950 960 970 980 990 1000
300 310 320 330
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA
:. :. . . :::: .: ::.: ::::::::.:::.. :
XP_006 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
1010 1020 1030 1040 1050 1060
XP_006 KSSAAYILFYTSLGPRVTDVAT
1070 1080
>>XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa)
initn: 739 init1: 493 opt: 733 Z-score: 731.1 bits: 145.4 E(85289): 5.5e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:738-1049)
10 20 30 40 50 60
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
: : : .::: :::::: .:.: ::::
XP_016 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
710 720 730 740 750 760
70 80 90 100 110 120
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
. :..:: . : ... : . .::: :. .: .: :. .::. : ..:.
XP_016 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
770 780 790 800 810 820
130 140 150 160 170
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
. :. :::.::.:. ... ::: :.: .: . :.. .... .:
XP_016 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
830 840 850 860 870 880
180 190 200 210 220 230
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
. :::. ::. :.. .. :: :.: . :.: .:::. : .:.:.:::. : ...
XP_016 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
890 900 910 920 930 940
240 250 260 270 280 290
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
:: ::...:: :...... . : : : ... :::::. .: :.::.:.. .:: :::
XP_016 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
950 960 970 980 990 1000
300 310 320 330
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA
:. :. . . :::: .: ::.: ::::::::.:::.. :
XP_016 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
1010 1020 1030 1040 1050 1060
XP_016 KSSAAYILFYTSLGPRVTDVAT
1070 1080
>>XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa)
initn: 739 init1: 493 opt: 733 Z-score: 731.1 bits: 145.4 E(85289): 5.5e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:738-1049)
10 20 30 40 50 60
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
: : : .::: :::::: .:.: ::::
XP_016 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
710 720 730 740 750 760
70 80 90 100 110 120
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
. :..:: . : ... : . .::: :. .: .: :. .::. : ..:.
XP_016 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
770 780 790 800 810 820
130 140 150 160 170
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
. :. :::.::.:. ... ::: :.: .: . :.. .... .:
XP_016 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
830 840 850 860 870 880
180 190 200 210 220 230
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
. :::. ::. :.. .. :: :.: . :.: .:::. : .:.:.:::. : ...
XP_016 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
890 900 910 920 930 940
240 250 260 270 280 290
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
:: ::...:: :...... . : : : ... :::::. .: :.::.:.. .:: :::
XP_016 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
950 960 970 980 990 1000
300 310 320 330
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA
:. :. . . :::: .: ::.: ::::::::.:::.. :
XP_016 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
1010 1020 1030 1040 1050 1060
XP_016 KSSAAYILFYTSLGPRVTDVAT
1070 1080
>>XP_006720824 (OMIM: 603158) PREDICTED: ubiquitin carbo (1118 aa)
initn: 739 init1: 493 opt: 733 Z-score: 731.0 bits: 145.4 E(85289): 5.6e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:767-1078)
10 20 30 40 50 60
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
: : : .::: :::::: .:.: ::::
XP_006 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
740 750 760 770 780 790
70 80 90 100 110 120
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
. :..:: . : ... : . .::: :. .: .: :. .::. : ..:.
XP_006 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
800 810 820 830 840 850
130 140 150 160 170
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
. :. :::.::.:. ... ::: :.: .: . :.. .... .:
XP_006 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
860 870 880 890 900 910
180 190 200 210 220 230
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
. :::. ::. :.. .. :: :.: . :.: .:::. : .:.:.:::. : ...
XP_006 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
920 930 940 950 960 970
240 250 260 270 280 290
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
:: ::...:: :...... . : : : ... :::::. .: :.::.:.. .:: :::
XP_006 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
980 990 1000 1010 1020 1030
300 310 320 330
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA
:. :. . . :::: .: ::.: ::::::::.:::.. :
XP_006 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
1040 1050 1060 1070 1080 1090
XP_006 KSSAAYILFYTSLGPRVTDVAT
1100 1110
>>NP_005145 (OMIM: 603158) ubiquitin carboxyl-terminal h (1118 aa)
initn: 739 init1: 493 opt: 733 Z-score: 731.0 bits: 145.4 E(85289): 5.6e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:767-1078)
10 20 30 40 50 60
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
: : : .::: :::::: .:.: ::::
NP_005 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
740 750 760 770 780 790
70 80 90 100 110 120
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
. :..:: . : ... : . .::: :. .: .: :. .::. : ..:.
NP_005 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
800 810 820 830 840 850
130 140 150 160 170
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
. :. :::.::.:. ... ::: :.: .: . :.. .... .:
NP_005 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
860 870 880 890 900 910
180 190 200 210 220 230
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
. :::. ::. :.. .. :: :.: . :.: .:::. : .:.:.:::. : ...
NP_005 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
920 930 940 950 960 970
240 250 260 270 280 290
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
:: ::...:: :...... . : : : ... :::::. .: :.::.:.. .:: :::
NP_005 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
980 990 1000 1010 1020 1030
300 310 320 330
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA
:. :. . . :::: .: ::.: ::::::::.:::.. :
NP_005 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
1040 1050 1060 1070 1080 1090
NP_005 KSSAAYILFYTSLGPRVTDVAT
1100 1110
>>XP_011520495 (OMIM: 603158) PREDICTED: ubiquitin carbo (1118 aa)
initn: 739 init1: 493 opt: 733 Z-score: 731.0 bits: 145.4 E(85289): 5.6e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:767-1078)
10 20 30 40 50 60
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
: : : .::: :::::: .:.: ::::
XP_011 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
740 750 760 770 780 790
70 80 90 100 110 120
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
. :..:: . : ... : . .::: :. .: .: :. .::. : ..:.
XP_011 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
800 810 820 830 840 850
130 140 150 160 170
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
. :. :::.::.:. ... ::: :.: .: . :.. .... .:
XP_011 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
860 870 880 890 900 910
180 190 200 210 220 230
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
. :::. ::. :.. .. :: :.: . :.: .:::. : .:.:.:::. : ...
XP_011 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
920 930 940 950 960 970
240 250 260 270 280 290
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
:: ::...:: :...... . : : : ... :::::. .: :.::.:.. .:: :::
XP_011 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
980 990 1000 1010 1020 1030
300 310 320 330
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA
:. :. . . :::: .: ::.: ::::::::.:::.. :
XP_011 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
1040 1050 1060 1070 1080 1090
XP_011 KSSAAYILFYTSLGPRVTDVAT
1100 1110
339 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 06:49:59 2016 done: Fri Nov 4 06:50:00 2016
Total Scan time: 6.400 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]