FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7358, 419 aa
  1>>>pF1KB7358 419 - 419 aa - 419 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2761+/-0.000894; mu= 9.2683+/- 0.054
 mean_var=146.3063+/-33.481, 0's: 0 Z-trim(110.6): 141  B-trim: 1229 in 2/51
 Lambda= 0.106033
 statistics sampled from 11601 (11765) to 11601 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.361), width:  16
 Scan time:  2.910

The best scores are:                                      opt bits E(32554)
CCDS34266.1 GPR151 gene_id:134391|Hs108|chr5       ( 419) 2866 450.0  2e-126
CCDS11739.1 GALR2 gene_id:8811|Hs108|chr17         ( 387)  361 66.8 4.2e-11


>>CCDS34266.1 GPR151 gene_id:134391|Hs108|chr5            (419 aa)
 initn: 2866 init1: 2866 opt: 2866  Z-score: 2383.4  bits: 450.0 E(32554): 2e-126
Smith-Waterman score: 2866; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KB7 MLAAAFADSNSSSMNVSFAHLHFAGGYLPSDSQDWRTIIPALLVAVCLVGFVGNLCVIGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MLAAAFADSNSSSMNVSFAHLHFAGGYLPSDSQDWRTIIPALLVAVCLVGFVGNLCVIGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LLHNAWKGKPSMIHSLILNLSLADLSLLLFSAPIRATAYSKSVWDLGWFVCKSSDWFIHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LLHNAWKGKPSMIHSLILNLSLADLSLLLFSAPIRATAYSKSVWDLGWFVCKSSDWFIHT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 CMAAKSLTIVVVAKVCFMYASDPAKQVSIHNYTIWSVLVAIWTVASLLPLPEWFFSTIRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 CMAAKSLTIVVVAKVCFMYASDPAKQVSIHNYTIWSVLVAIWTVASLLPLPEWFFSTIRH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 HEGVEMCLVDVPAVAEEFMSMFGKLYPLLAFGLPLFFASFYFWRAYDQCKKRGTKTQNLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HEGVEMCLVDVPAVAEEFMSMFGKLYPLLAFGLPLFFASFYFWRAYDQCKKRGTKTQNLR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 NQIRSKQVTVMLLSIAIISALLWLPEWVAWLWVWHLKAAGPAPPQGFIALSQVLMFSISS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NQIRSKQVTVMLLSIAIISALLWLPEWVAWLWVWHLKAAGPAPPQGFIALSQVLMFSISS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 ANPLIFLVMSEEFREGLKGVWKWMITKKPPTVSESQETPAGNSEGLPDKVPSPESPASIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ANPLIFLVMSEEFREGLKGVWKWMITKKPPTVSESQETPAGNSEGLPDKVPSPESPASIP
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KB7 EKEKPSSPSSGKGKTEKAEIPILPDVEQFWHERDTVPSVQDNDPIPWEHEDQETGEGVK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EKEKPSSPSSGKGKTEKAEIPILPDVEQFWHERDTVPSVQDNDPIPWEHEDQETGEGVK
              370       380       390       400       410         

>>CCDS11739.1 GALR2 gene_id:8811|Hs108|chr17              (387 aa)
 initn: 296 init1: 138 opt: 361  Z-score: 312.9  bits: 66.8 E(32554): 4.2e-11
Smith-Waterman score: 361; 25.9% identity (58.2% similar) in 316 aa overlap (25-333:19-319)

               10        20        30        40        50        60
pF1KB7 MLAAAFADSNSSSMNVSFAHLHFAGGYLPSDSQDWRTIIPALLVAVCLVGFVGNLCVIGI
                               ::. :       .:.: :.. . ::: :::  :...
CCDS11       MNVSGCPGAGNASQAGGGGGWHPEA-----VIVPLLFALIFLVGTVGNTLVLAV
                     10        20             30        40         

               70        80        90       100       110       120
pF1KB7 LLHNAWKGKPSMIHSLILNLSLADLSLLLFSAPIRATAYSKSVWDLGWFVCKSSDWFIHT
       ::...     :  . .::::..::: ..:  .:..:: :. . : .: ..::.  ..:  
CCDS11 LLRGGQ--AVSTTNLFILNLGVADLCFILCCVPFQATIYTLDGWVFGSLLCKAVHFLIFL
      50          60        70        80        90       100       

              130       140       150        160       170         
pF1KB7 CMAAKSLTIVVVAKVCFMYASDPAKQVSIHN-YTIWSVLVAIWTVASLLPLPEWFFSTIR
        : :.:.:...:.   ..    : ..  ...  .  ...  :: .. :.  :  ..:  :
CCDS11 TMHASSFTLAAVSLDRYLAIRYPLHSRELRTPRNALAAIGLIWGLSLLFSGP--YLSYYR
       110       120       130       140       150         160     

     180         190       200           210       220       230   
pF1KB7 HHE--GVEMCLVDVPAVAEEFMSM----FGKLYPLLAFGLPLFFASFYFWRAYDQCKKRG
       . .  .. .:     :  .. :..    :. : :.:..::    .  :.::: :     :
CCDS11 QSQLANLTVCHPAWSAPRRRAMDICTFVFSYLLPVLVLGLTYARTLRYLWRAVDPVAA-G
         170       180       190       200       210       220     

           240       250       260       270       280       290   
pF1KB7 TKTQNLRNQIRSKQVTVMLLSIAIISALLWLPEWVAWLWVWHLKAAGPAPPQGFIALSQV
       . ..  .     ..:: :.: .: .  : :.:. .  : ::  .        ..  ::..
CCDS11 SGARRAK-----RKVTRMILIVAALFCLCWMPHHALILCVWFGQFPLTRATYALRILSHL
          230            240       250       260       270         

           300       310       320       330       340       350   
pF1KB7 LMFSISSANPLIFLVMSEEFREGLKGVWKWMITKKPPTVSESQETPAGNSEGLPDKVPSP
       . .. : .::... ..:..::.:.. .   .. . :  .:                    
CCDS11 VSYANSCVNPIVYALVSKHFRKGFRTICAGLLGRAPGRASGRVCAAARGTHSGSVLERES
     280       290       300       310       320       330         

           360       370       380       390       400       410   
pF1KB7 ESPASIPEKEKPSSPSSGKGKTEKAEIPILPDVEQFWHERDTVPSVQDNDPIPWEHEDQE
                                                                   
CCDS11 SDLLHMSEAAGALRPCPGASQPCILEPCPGPSWQGPKAGDSILTVDVA            
     340       350       360       370       380                   




419 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:49:20 2016 done: Fri Nov  4 06:49:20 2016
 Total Scan time:  2.910 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]