FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7356, 1177 aa
  1>>>pF1KB7356 1177 - 1177 aa - 1177 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3922+/-0.00111; mu= 17.7086+/- 0.067
 mean_var=98.6358+/-19.222, 0's: 0 Z-trim(105.7): 38  B-trim: 0 in 0/51
 Lambda= 0.129139
 statistics sampled from 8542 (8573) to 8542 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.263), width:  16
 Scan time:  4.270

The best scores are:                                      opt bits E(32554)
CCDS46038.1 TDRD12 gene_id:91646|Hs108|chr19       ( 395) 2687 511.8 1.3e-144


>>CCDS46038.1 TDRD12 gene_id:91646|Hs108|chr19            (395 aa)
 initn: 2687 init1: 2687 opt: 2687  Z-score: 2709.6  bits: 511.8 E(32554): 1.3e-144
Smith-Waterman score: 2687; 100.0% identity (100.0% similar) in 394 aa overlap (1-394:1-394)

               10        20        30        40        50        60
pF1KB7 MLQLLVLKIEDPGCFWVIIKGCSPFLDHDVDYQKLNSAMNDFYNSTCQDIEIKPLTLEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MLQLLVLKIEDPGCFWVIIKGCSPFLDHDVDYQKLNSAMNDFYNSTCQDIEIKPLTLEEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 QVCVVYCEELKCWCRAIVKSITSSADQYLAECFLVDFAKNIPVKSKNIRVVVESFMQLPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QVCVVYCEELKCWCRAIVKSITSSADQYLAECFLVDFAKNIPVKSKNIRVVVESFMQLPY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RAKKFSLYCTKPVTLHIDFCRDSTDIVPAKKWDNAAIQYFQNLLKATTQVEARLCAVEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RAKKFSLYCTKPVTLHIDFCRDSTDIVPAKKWDNAAIQYFQNLLKATTQVEARLCAVEED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TFEVYLYVTIKDEKVCVNDDLVAKNYACYMSPTKNKNLDYLEKPRLNIKSAPSFNKLNPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TFEVYLYVTIKDEKVCVNDDLVAKNYACYMSPTKNKNLDYLEKPRLNIKSAPSFNKLNPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LTLWPMFLQGKDVQGMEDSHGVNFPAQSLQHTWCKGIVGDLRPTATAQDKAVKCNMDSLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LTLWPMFLQGKDVQGMEDSHGVNFPAQSLQHTWCKGIVGDLRPTATAQDKAVKCNMDSLR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 DSPKDKSEKKHHCISLKDTNKRVESSVYWPAKRGITIYADPDVPEASALSQKSNEKPLRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DSPKDKSEKKHHCISLKDTNKRVESSVYWPAKRGITIYADPDVPEASALSQKSNEKPLRL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 TEKKEYDEKNSCVKLLQFLNPDPLRADGISDLQQLQKLKGLQPPVVVLRNKIKPCLTIDS
       ::::::::::::::::::::::::::::::::::                          
CCDS46 TEKKEYDEKNSCVKLLQFLNPDPLRADGISDLQQT                         
              370       380       390                              

              430       440       450       460       470       480
pF1KB7 SPLSADLKKALQRNKFPGPSHTESYSWPPIARGCDVVVISHCESNPLLYLLPVLTVLQTG




1177 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 09:05:12 2016 done: Sat Nov  5 09:05:12 2016
 Total Scan time:  4.270 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]